- Transcript 'KH2012:KH.C6.19.v1.A...'
Transcript Model
Transcript Id
KH2012:KH.C6.19.v1.A.ND1-1
Possible name(s)
ADGRB2; ADGRB3; HMCN1
Gene model
Location
KhC6 [28,082 / 29,832]
Amino acid sequence
Length: 490
>KH.C6.19.v1.A.ND1-1
LSLSCPIYFFIYDHIYTQCFISENRNEIYSPSPGCYQINALQYIGANPQVAGWPGITVNE
CYLMDGCPVNGNCYRPGQLTRVQVRSGKDTARQSVQTGYNYFGQPMCLNYNPTTPQEYLD
GYHQCRQAGCVVDPLITPNVLKQQLYQIATTLPVTQQLPFWNGVLSGQIRADNYRQYMRP
SACPTAQASSGTVPYSLSLGRKKRSIFPGAGSTSNSGFPNLVPQCPYQSYQGILTGSFAS
CCQRNYCYTPRTSILRSASGVAAYQGEWGEYSACTVSCGGGTRTRSRPCVKYHNNDTCEH
EAQQTHRCNVEACPRFGDWGNYGVCSHDCGGGTQTRTRPCLPEGSTCQDDAQGGASQSRP
CNQIACPTYSAWDPWGDCSVRCGVGEKTRTRTCTSPPGAAPCSAESLISTESCAVSCGTC
QETEGPCESYNKCYKEITTKCVPDAQGGAYCPNCPNRIIKRRCFPTNGGILGSYCAYCRD
PQVPCLPVTP
Nucleotide sequence
Length: 1,561
>KH2012:KH.C6.19.v1.A.ND1-1
TTGTCTCTAAGTTGCCCTATATATTTTTTCATTTATGATCACATTTACACTCAATGCTTC
ATCAGCGAAAACAGAAACGAAATATATTCTCCATCACCCGGCTGCTATCAAATCAATGCA
CTGCAATATATTGGCGCGAACCCACAAGTTGCTGGCTGGCCAGGTATTACAGTGAATGAA
TGCTACCTGATGGACGGCTGTCCGGTTAATGGCAATTGTTACCGACCTGGTCAGCTCACG
AGAGTCCAAGTAAGATCAGGAAAAGACACAGCTCGTCAAAGTGTCCAAACTGGTTACAAC
TACTTCGGTCAACCGATGTGTCTTAACTACAATCCAACAACACCACAAGAATACTTGGAC
GGTTATCATCAATGCAGACAAGCTGGTTGTGTGGTTGACCCATTAATCACTCCAAATGTA
CTTAAACAACAGCTTTACCAAATTGCAACAACATTACCAGTTACTCAGCAATTGCCGTTT
TGGAACGGTGTTTTGAGTGGCCAAATAAGAGCTGACAACTACAGGCAATATATGCGACCA
AGTGCTTGTCCGACTGCTCAAGCGTCTTCTGGTACAGTACCATATTCGTTAAGCTTAGGC
AGAAAGAAGCGATCTATTTTTCCAGGTGCTGGGTCAACTTCCAACAGCGGCTTTCCAAAT
CTTGTGCCACAGTGCCCTTACCAAAGTTACCAAGGTATTTTAACTGGAAGCTTCGCCAGT
TGCTGTCAAAGAAATTACTGTTATACGCCAAGAACTAGCATCTTGAGGTCGGCTTCAGGG
GTTGCAGCTTATCAGGGTGAATGGGGAGAATACAGCGCGTGTACTGTCAGCTGCGGTGGC
GGGACAAGAACGAGAAGCAGACCATGCGTGAAATACCATAATAACGACACTTGTGAACAT
GAGGCACAGCAAACTCATAGGTGTAATGTGGAAGCCTGTCCTCGGTTTGGAGACTGGGGC
AATTATGGAGTTTGTTCTCATGATTGTGGAGGTGGAACGCAAACCCGAACCCGACCTTGC
TTACCTGAAGGTAGCACCTGCCAAGATGACGCTCAAGGAGGAGCTTCTCAATCACGACCT
TGCAACCAAATTGCATGCCCAACCTATTCTGCTTGGGATCCATGGGGAGACTGCAGTGTT
CGATGCGGCGTTGGAGAGAAAACACGGACAAGAACTTGTACATCACCACCTGGAGCCGCA
CCATGTAGCGCAGAGTCTTTGATTTCCACAGAATCGTGCGCCGTTAGTTGTGGGACATGC
CAGGAAACAGAAGGCCCATGTGAATCATATAATAAATGCTACAAGGAAATTACAACTAAG
TGCGTACCAGATGCACAGGGGGGAGCTTACTGTCCTAACTGTCCCAACCGTATCATTAAA
AGACGTTGCTTTCCAACTAATGGTGGTATACTTGGCTCTTACTGCGCATACTGCCGGGAC
CCACAAGTTCCTTGTCTTCCAGTAACCCCATAAACACTCTACCGTCTTTGCTTCTCGCAA
CATTTATTACCGCACGTGTTGAAAAGTAGTTACTCTTGTATTTTTCTTAGAGAAAATAAA
C
| ProSiteProfiles |
TSP1_rpt (IPR000884) - T[262-314] 11.897 - T[316-365] 9.191 - T[366-418] 11.357 |
| Gene3D |
TSP1_rpt_sf (IPR036383) - T[262-311] 1.2E-12 - T[312-369] 7.5E-9 - T[370-420] 3.3E-9 |
| SUPERFAMILY |
TSP1_rpt_sf (IPR036383) - T[263-313] 2.75E-11 - T[313-362] 3.27E-8 - T[366-413] 2.35E-9 |
| SMART |
TSP1_rpt (IPR000884) - T[265-314] 8.4E-10 - T[316-367] 8.0E-9 - T[369-418] 2.0E-7 |
| Pfam |
TSP1_rpt (IPR000884) - T[266-313] 9.0E-11 - T[317-366] 2.8E-4 - T[370-413] 8.7E-7 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HMCN1_HUMAN | 38.816 % | 90.9 | 5.13E-19 |
| AGRB2_HUMAN | 33.149 % | 93.6 | 5.55E-20 |
| AGRB3_HUMAN | 35.971 % | 82 | 2.35E-16 |
