- Transcript 'KH2012:KH.C3.553.v1....' >
- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'Moocul.CG.ELv1_2.S73...' >
- Transcript 'KH2012:KH.C3.553.v1....' >
- Transcript 'KH2012:KH.C6.184.v1....'
Transcript Model
Transcript Id
KH2012:KH.C6.184.v1.A.ND1-1
Possible name(s)
CXCR4; RXFP3
Gene model
Location
KhC6 [649,541 / 658,770]
Amino acid sequence
Length: 423
>KH.C6.184.v1.A.ND1-1
FEFRNLVFYKDYLEKMNSNGIVNTTSTPQISTTTEGYSTLIPEYARIMIIVVYMFVFVFG
TIGNACVIVVMMIVPKFKTPTDIFILNLSFADLLFSSSLIFWAVEQIYEMVWFLGVFMCK
ALSAVTLINLHASVLFLAAMAVNRCKTVRRKRQSSSYGDIIKAKVSCVIIWLVAAIISSL
AWFRKTEIVPSPAGNVTRCLWRMPDTGDRYVWERIYFGSRVLMGFTLPLIVIIISYVLVV
MRLRHTRQQVTVKSSMQMRVTITVFAVIAAFVICWLPNHVTSIIHALTLGENEEKRKDLH
TYELNLISNCLVAFNSCINPILYAWLNKRFRDQLKMIKCCSGRMTKLSVGTRNKRNYNMR
LPVEQHDQNQVENEGNQTPQNGRTNVTLLQDGGQSPPMGKNMDPLTRVKGTNMQPLLHRT
SAL
Nucleotide sequence
Length: 1,893
>KH2012:KH.C6.184.v1.A.ND1-1
CTTGTGGGTTTCATGGCTACAGTAAGACGACTAATTGATTTATGCAAGGACAACCTTGTC
TAATCACGTCCTAAATTGACGCTGATTCGCTTATGAGCAAGAGAAAAACCAAGCTGTATT
AGTGCGTGGAGCTCTAGTGGTAAAGGAGAAAATGCATTTGGGTAATTCGAATTCCGAAAC
CTTGTATTTTATAAAGATTATTTAGAAAAGATGAATTCTAATGGCATCGTCAACACAACA
TCTACGCCACAGATATCGACTACGACTGAAGGCTACAGCACTCTTATACCAGAATACGCT
CGAATCATGATCATAGTGGTCTACATGTTCGTGTTCGTGTTTGGTACGATTGGAAATGCT
TGTGTCATCGTAGTTATGATGATAGTGCCAAAGTTTAAGACGCCCACAGATATTTTTATT
CTTAACCTGTCCTTTGCCGATCTACTATTTTCAAGCAGTCTTATTTTCTGGGCCGTGGAA
CAAATATATGAAATGGTTTGGTTTCTTGGTGTTTTCATGTGCAAAGCGCTGAGCGCTGTA
ACTCTTATCAATTTGCACGCTTCTGTCCTATTTCTGGCAGCCATGGCAGTTAACAGGTGC
AAAACTGTGAGGCGTAAGCGACAATCCAGCAGTTATGGGGACATAATAAAAGCAAAGGTC
TCTTGCGTCATAATATGGCTTGTTGCAGCCATTATTTCGTCACTAGCCTGGTTCCGCAAG
ACTGAGATAGTACCTTCGCCTGCTGGTAACGTTACGAGATGTTTATGGCGCATGCCTGAC
ACTGGTGATCGTTACGTCTGGGAACGAATTTATTTCGGAAGTCGTGTTCTAATGGGATTT
ACACTGCCATTGATTGTGATAATCATTTCTTACGTTCTGGTCGTGATGCGGTTACGACAC
ACACGCCAACAAGTCACTGTTAAATCGTCAATGCAGATGAGAGTTACAATCACGGTATTT
GCTGTGATCGCTGCGTTCGTGATCTGCTGGCTTCCAAACCACGTGACCTCTATAATACAC
GCGCTAACATTGGGGGAAAATGAAGAAAAACGGAAAGACCTTCACACTTATGAACTCAAC
TTGATTTCGAATTGTTTAGTCGCGTTTAATAGCTGCATAAACCCAATCTTATACGCCTGG
CTGAACAAAAGGTTCAGGGACCAGCTTAAAATGATCAAGTGCTGCAGTGGTCGAATGACG
AAACTGAGCGTTGGGACTCGGAATAAAAGGAATTACAATATGAGGCTTCCTGTAGAACAG
CACGACCAAAACCAAGTTGAAAACGAGGGCAACCAAACGCCTCAAAATGGTAGAACAAAC
GTAACGCTCTTGCAGGACGGTGGACAATCTCCTCCAATGGGAAAGAACATGGACCCCCTT
ACCAGAGTAAAAGGCACGAACATGCAACCTCTACTGCACCGAACGAGCGCCTTGTAATCG
CCATAGCGCAACTGCCAATCGGCCTACTGATATAAAAGGCTGTTTTGGTCAGAAAAGTAA
CAAACTTATGTCAATTGAAAAAGGGATAGTCGTAACAACCTTTTAACATCTTTTTTGTAA
AGGCCTTATTACTTTGTATTTATTTCAACTGCCATTATCGCATAGTTATTGGCGGAATAT
TTGTTCCGGGTTCCCACCCTCGGCGTTGTCTCGCATTTTTTGCCGTTATATTTGTTCCAA
GTTGTTGCCAACTTGCAATTGTAGTGCCACATGCGGCATCGAAAGTAACCCATGAATAAA
CTAAAAACGGTTCCAATCTTGGGATTAATTAAGGGCGCTTTTTATTATTTCTTTTATCGT
TTTTCACTTGACCACATAATTCATTTTATGGTTCTCTCTGTTGCACAATAAGTGTCTTCA
ATGAAAATTTCATAGCGACTTTTGCTTTATATG
| PRINTS |
GPCR_Rhodpsn (IPR000276) - T[48-72] 4.1E-41 - T[81-102] 4.1E-41 - T[126-148] 4.1E-41 - T[162-183] 4.1E-41 - T[217-240] 4.1E-41 - T[260-284] 4.1E-41 - T[305-331] 4.1E-41 |
| SMART |
GPCR_Rhodpsn (IPR000276) - T[57-338] 0.0043 |
| Pfam |
GPCR_Rhodpsn (IPR000276) - T[63-323] 1.6E-38 |
| ProSiteProfiles |
GPCR_Rhodpsn_7TM (IPR017452) - T[63-323] 39.068 |
| ProSitePatterns |
GPCR_Rhodpsn (IPR000276) - T[132-148] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CXCR4_HUMAN | 27.171 % | 133 | 2.63E-35 |
| RL3R1_HUMAN | 32.836 % | 141 | 1.87E-37 |
| AGTR1_HUMAN | 28.866 % | 127 | 5.83E-33 |