- Transcript 'KH2012:KH.C6.145.v1....'
Transcript Model
Transcript Id
KH2012:KH.C6.145.v1.A.ND1-1
Possible name(s)
CHRD; CHRDL1; CHRDL2
Gene model
Location
KhC6 [1,223,476 / 1,232,250]
Amino acid sequence
Length: 980
>KH.C6.145.v1.A.ND1-1
TSCYYVTVVFIAMTSGICAGFLQIHPAEEALPSNNPRGCVFGRQFHVIGSSWHPNLGRPF
GIMYCVTCQCVKETTGRFKPDGQPKEVTRVTCHDVRKDCPHVTCKGAKVPRGGCCKVCPD
DTDTIVTSAEEFSSKNGDVPLPLDITEEKSINHDDSKAGVDEKTKSYVALLTSNDGGPLL
RATFNLHRDNLHFTIQYLRSTKPTIIEMLTNDDVTIYTHVTEMSPKPGQPIVCGVWRNLP
KHVVSSLDKRLLTLRAVFVQTGANMTSQGQIIRHRALSRETFSSILSTTPLDGASGAIAM
ITLGRHRFNKLHFAILLRRSSVTSQPTTITVRLLNNQNRTLRSTEKTLQPSSNELADVWS
TNSEILRRLGDGSLHIQMVARTTGSRDKQSYIGSVRAKTTCDLLQAVLSGSDCSLPASTG
AAGSAILNINSDNTVSYKVALVGISSRVTSISLLGDYRKKRTRVVADLTPQFVNGKAQGR
LENLNGKEIHLLLSNRVRVAVETEQSNSGELGGHVTSLLYGGHQARYKGLPIPLAGSLVR
PPVFTGAAGHVWLELNEECHLYYEIVVSGLSKERDTTLAAHLHGLAEIAETETGHKQLLK
GFYGKEARGILRELSSEIYEHLNQGNAFVQIATKSNPGGEIRGRVHIPNTCSRTIVNKAN
HKQDTSDTDQNSLSVPSSDVTTSRVTDLDAVVHDGVIPTYTERRLELDPSACYVIDEWKP
HGSEWAPDYDPKCTICVCESGSSLCDPVYCPPLECGRPVATEGSCCPVCNDGFGEIPTKH
DDGASIGSLFGSPFTQLDQKEDEKEKEKEGCYYGGDGQIHAIGSWWHPYFKRFGHVSCVN
CTCRPDGEIVCGKITCPPVTCSNPIKQNPRDCCKTCPEVTRHELRHESRDHRMQDDSVSR
MCQFGRELRAPGEKWTLGYLGRRNLECIECECATHGVKHKCRKNCPAVSHECSRVERNVS
GCCPWRCADRQRSTERFPFS
Nucleotide sequence
Length: 3,240
>KH2012:KH.C6.145.v1.A.ND1-1
ACGTCATGCTATTACGTCACGGTGGTATTCATTGCTATGACGTCAGGTATATGTGCTGGC
TTTCTGCAGATACATCCAGCAGAAGAAGCATTGCCGTCTAATAACCCGCGAGGTTGTGTA
TTTGGTCGTCAGTTCCACGTCATCGGATCATCATGGCACCCAAACCTTGGTCGTCCATTT
GGAATCATGTATTGTGTCACGTGTCAGTGCGTCAAAGAGACCACTGGGCGTTTCAAACCA
GACGGACAACCAAAGGAAGTTACTCGGGTCACGTGTCATGACGTAAGAAAGGACTGCCCC
CACGTCACGTGCAAAGGGGCCAAGGTACCCAGGGGAGGATGCTGTAAAGTTTGCCCAGAC
GATACAGATACAATTGTGACGTCAGCCGAAGAATTTTCATCGAAAAATGGTGATGTTCCG
CTGCCATTGGATATCACTGAAGAAAAATCAATTAACCACGACGACTCAAAGGCTGGTGTT
GATGAGAAGACAAAAAGTTATGTTGCACTGTTAACCAGCAATGATGGTGGGCCATTGTTA
CGAGCTACGTTTAACCTGCACAGGGATAATCTGCATTTTACGATCCAGTATTTGAGGTCA
ACCAAACCCACCATTATAGAAATGCTGACTAATGATGATGTCACAATATACACTCATGTA
ACTGAAATGTCACCAAAGCCAGGACAACCTATTGTTTGCGGGGTATGGCGTAATCTACCA
AAACACGTTGTTAGCTCCTTAGATAAAAGGTTGTTGACTCTCAGAGCTGTTTTTGTCCAA
ACTGGTGCCAATATGACATCACAAGGTCAAATAATACGACACAGAGCATTGAGTCGAGAA
ACTTTTAGTTCGATTTTATCCACGACACCTCTAGATGGAGCTAGTGGAGCAATTGCGATG
ATCACCCTTGGCCGACATCGATTCAATAAACTTCATTTTGCCATTTTACTCAGACGATCT
TCTGTGACATCACAACCCACCACAATCACTGTGCGATTACTCAACAATCAAAACAGAACG
TTGCGATCAACCGAGAAAACTCTTCAACCCTCAAGTAATGAGCTAGCTGATGTGTGGTCG
ACAAATTCTGAAATCCTTCGAAGATTGGGTGATGGTTCACTTCATATACAGATGGTTGCT
AGGACAACAGGGTCACGTGATAAACAAAGCTACATCGGCAGCGTGAGAGCAAAAACAACT
TGTGACCTGTTGCAAGCTGTTTTATCTGGAAGTGACTGTAGCCTACCAGCCAGTACAGGA
GCAGCTGGATCCGCGATTCTGAATATTAATTCTGACAACACTGTTTCTTACAAGGTGGCG
CTAGTGGGTATTTCAAGTCGGGTGACCTCAATATCACTGCTTGGAGACTACAGAAAGAAG
CGAACACGCGTAGTAGCCGATCTCACCCCACAATTTGTGAATGGGAAAGCCCAAGGAAGA
CTGGAAAACCTTAATGGGAAAGAGATACATCTTTTACTAAGCAACCGTGTGCGTGTTGCC
GTGGAAACTGAACAAAGCAATAGTGGAGAGCTGGGTGGTCATGTGACTTCTCTCCTTTAT
GGAGGCCACCAAGCTAGATATAAAGGCCTTCCAATTCCTCTTGCTGGTTCTCTAGTACGA
CCCCCTGTATTCACTGGGGCTGCAGGTCACGTTTGGCTTGAACTGAATGAAGAATGTCAT
CTTTATTATGAAATTGTTGTTTCTGGACTAAGCAAAGAGCGTGACACAACATTAGCCGCA
CATTTACACGGTCTCGCTGAAATAGCTGAAACAGAAACTGGACATAAACAACTTTTGAAA
GGTTTCTATGGAAAAGAGGCGCGTGGAATATTAAGAGAGTTATCTTCAGAAATATATGAA
CATCTCAACCAGGGCAATGCTTTTGTACAGATTGCAACAAAGTCAAACCCAGGTGGAGAA
ATACGTGGTCGTGTTCATATACCAAACACTTGCTCCAGGACAATAGTTAACAAGGCTAAC
CATAAACAAGATACTTCAGACACAGACCAGAATTCATTAAGTGTTCCAAGCTCTGATGTC
ACCACGTCACGGGTGACTGATCTCGATGCAGTGGTGCATGACGGGGTAATCCCAACATAC
ACCGAGCGTCGTTTGGAGCTTGACCCATCCGCTTGTTACGTCATAGACGAATGGAAACCC
CATGGTAGTGAATGGGCACCAGATTACGACCCAAAATGCACAATATGCGTTTGTGAGTCC
GGTAGTTCACTTTGCGATCCTGTTTACTGCCCGCCACTAGAGTGCGGCAGACCAGTGGCC
ACCGAAGGGAGCTGTTGTCCAGTGTGTAACGATGGGTTTGGGGAAATACCAACCAAGCAT
GATGATGGGGCTTCTATAGGATCTCTGTTTGGGTCTCCATTTACACAACTCGATCAAAAA
GAAGACGAGAAAGAAAAAGAGAAAGAAGGTTGCTACTACGGGGGCGATGGACAAATACAC
GCGATAGGTTCATGGTGGCATCCATATTTTAAACGATTCGGCCACGTATCGTGCGTGAAC
TGCACGTGTAGGCCAGACGGTGAAATTGTGTGTGGAAAAATTACGTGCCCGCCAGTAACG
TGCTCAAATCCTATCAAACAAAATCCGAGAGATTGCTGTAAAACTTGCCCAGAGGTCACA
CGTCACGAACTACGTCACGAATCACGTGACCATCGCATGCAGGACGACAGCGTGTCCAGG
ATGTGTCAGTTTGGTCGTGAGCTACGAGCACCCGGGGAAAAATGGACGCTTGGATATCTG
GGCAGAAGAAACCTTGAATGTATAGAATGCGAATGTGCTACCCATGGTGTGAAACACAAG
TGCCGCAAAAACTGTCCAGCTGTCAGTCATGAATGCAGTCGAGTGGAACGAAACGTTTCC
GGTTGCTGCCCATGGCGTTGCGCGGACCGTCAGAGGTCGACCGAGAGATTTCCGTTTTCG
TAAGATGGTTTTCCACGCTTGCCTTTTTGTTTATATCACTGTTTGATATTGTGCCTGTGC
TGTGGTTGCATTACATTCCAATTACGTTTAATAAACGAAGTATTTTTTGACACATTTCAT
ACAAAATCTGCACTTTTCTAGTCCGTGTTCCGGTGTCGTGATATATTTGGACTGAATTTG
GTTTGGGTGCTATTGCGCATGCGCCGCCACTATACGCACGCGCATACATGACAACATGGT
CAAGTATCTCATGTCCATATTGTCGGCACCCTATATGTCACGCGGCAATAAAATACGCAA
| PIRSF |
Chordin (IPR016353) - T[3-979] 3.5E-270 |
| SMART |
VWF_dom (IPR001007) - T[39-118] 0.096 - T[712-769] 1.3E-7 - T[811-876] 1.6E-4 - T[902-967] 3.4 |
| ProSiteProfiles |
CHRD (IPR010895) - T[163-276] 13.342 - T[278-397] 13.474 - T[400-520] 19.056 - T[526-650] 20.478 |
| SMART |
CHRD (IPR010895) - T[402-517] 1.0E-16 - T[528-647] 9.6E-29 |
| Pfam |
CHRD (IPR010895) - T[404-515] 7.2E-9 - T[532-645] 4.7E-18 |
| ProSiteProfiles |
VWF_dom (IPR001007) - T[710-770] 11.045 - T[809-877] 9.489 |
| Pfam |
VWF_dom (IPR001007) - T[712-769] 1.1E-7 - T[816-876] 2.6E-7 |
| ProSitePatterns |
VWF_dom (IPR001007) - T[733-769] . - T[838-876] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CHRD_HUMAN | 33.579 % | 462 | 1.43E-147 |
