- Transcript 'KH2012:KH.C5.656.v1....'
Transcript Model
Transcript Id
KH2012:KH.C5.656.v1.A.SL1-1
Possible name(s)
PABPC4; RBM19; RBM28
Gene model
Location
KhC5 [4,900,599 / 4,905,247]
Amino acid sequence
Length: 823
>KH.C5.656.v1.A.SL1-1
TFTVMNDTLSHKTVFVKGIPASCSNDQLKETFSVHGPIKEAFVVKTKSEHESKKCIGFVT
YQTNDDAKSAVNASPSTLEVDGHKLNVIFAKKKKFSKGNKNKRKAAVSNEEAGFDIVPLE
CDNSDKTVEKVEEVATSNKFIVAIEGLKSINDISSLWKKKSLGEINSADVKKENETVLVS
FPNKQKALKATARINNTYFNDVVIHAALQVDTDSKEFRKSSKKSRLIIRNLSFFCTEDEL
KSEFKRFGKITEVKIPVKPDGKKRGFAFVQFSHVLEAGKAIKEVNMSEIKGRKVAVDWAL
PREKYQEITKSDTKDEEVPKQEETTDLSEKASIEDDSQKEEEEEEKEQEEESEMEEDESE
VEDEEEDEGSSEDESMDEEKQEEGAVKDKEADKKSKPQKRTESSDVHEGKTVFIRNLSYE
SEEAELKIVMEKFGDINYCKIVINKATGLPKGSAFVQFATKEEAEKCIEAPQISLDGRDL
FVTLATTRAESTKLVKVKKEEGREKEDKRNLYLANEGLIRPGTQAAEGLSEIELNKRQRI
ENAKRLKLKNSNIFVSTTRLCVHNLPRAVDDAKLKELVNKVFENENRKPKIIECRVMRDR
EKKTSNGVGRSLGFAFVALTKHEDSLKALRSLNNNPEIFGALKRPIVEFSLENRLAIEAQ
MQKRKRQLTRNELKGAVENTAPKKKRKWDVPKPKVEKSKVTPSPILSKVDRKPFQGSTGT
TLSGKKLKMPKHSGLKIRKRNKGNVLAQIKESKKLNRPPSVRNAQANKKQARAARPEPQQ
PKEKRQRRSGKSKDVQMENDFNKLVAKYTSKFSSKLKGKWHES
Nucleotide sequence
Length: 2,745
>KH2012:KH.C5.656.v1.A.SL1-1
ACGTTTACAGTCATGAATGACACTCTTAGCCATAAAACAGTTTTTGTAAAAGGTATTCCT
GCTTCGTGTTCAAATGACCAATTAAAAGAGACTTTCAGTGTACATGGCCCAATTAAAGAA
GCATTTGTTGTTAAGACAAAATCTGAGCATGAAAGCAAAAAATGTATTGGTTTCGTTACT
TACCAAACCAATGATGACGCAAAATCAGCAGTTAACGCTTCACCGAGTACACTGGAAGTG
GACGGTCACAAACTAAACGTGATTTTTGCAAAGAAAAAGAAATTTTCCAAAGGGAATAAG
AACAAACGTAAAGCAGCAGTGAGTAATGAAGAGGCTGGGTTTGATATCGTGCCGTTGGAA
TGTGACAATTCTGATAAAACTGTCGAAAAAGTTGAAGAAGTAGCAACCAGTAATAAATTT
ATTGTTGCTATTGAAGGACTAAAGTCTATTAATGATATAAGTTCTTTATGGAAGAAAAAA
TCCTTGGGTGAAATTAACTCAGCTGATGTCAAAAAAGAAAATGAAACAGTTCTCGTCTCA
TTTCCAAACAAGCAAAAAGCTTTAAAAGCGACAGCTAGGATAAATAACACCTATTTTAAT
GATGTCGTAATTCATGCTGCCTTGCAAGTTGATACAGATTCAAAGGAGTTTCGAAAATCA
TCTAAAAAATCTCGGTTAATCATCAGGAACCTAAGTTTCTTCTGTACGGAAGATGAGTTG
AAATCTGAGTTTAAAAGGTTTGGAAAAATCACTGAAGTAAAAATCCCAGTAAAACCAGAT
GGGAAAAAACGTGGGTTTGCATTTGTGCAATTCTCACATGTATTGGAAGCGGGTAAAGCA
ATAAAAGAAGTGAATATGAGTGAAATTAAGGGCAGAAAAGTAGCAGTAGATTGGGCTTTG
CCGAGGGAAAAATACCAAGAAATAACGAAGTCAGATACAAAAGATGAAGAAGTACCAAAG
CAAGAAGAAACTACAGATTTATCTGAAAAAGCATCAATTGAAGATGATTCTCAAAAAGAA
GAGGAAGAAGAAGAGAAGGAGCAAGAGGAGGAGAGTGAGATGGAGGAAGATGAAAGTGAG
GTGGAGGATGAGGAGGAAGATGAAGGATCATCTGAAGATGAATCAATGGACGAAGAGAAA
CAAGAAGAGGGAGCAGTAAAAGACAAAGAAGCTGATAAAAAATCTAAGCCACAAAAACGA
ACAGAATCCTCTGATGTCCATGAAGGAAAAACTGTTTTTATCCGAAACTTGTCGTATGAA
TCTGAAGAGGCAGAACTGAAAATTGTGATGGAGAAGTTTGGGGATATAAATTACTGTAAA
ATCGTTATAAATAAAGCAACAGGCCTTCCAAAGGGTTCAGCTTTTGTTCAATTCGCAACA
AAAGAAGAAGCTGAAAAATGTATCGAGGCACCACAGATTTCTCTAGATGGGAGAGATCTA
TTCGTCACCCTAGCAACAACCCGTGCAGAGTCAACCAAGCTTGTAAAAGTAAAAAAAGAG
GAGGGAAGAGAAAAGGAAGATAAAAGGAATTTGTATCTTGCAAATGAAGGCTTAATAAGA
CCAGGAACCCAAGCAGCAGAAGGTCTCAGTGAGATAGAGCTGAACAAAAGACAACGCATT
GAAAATGCCAAGAGGCTCAAACTAAAAAATTCCAATATATTTGTCTCTACAACTCGACTG
TGCGTTCATAACCTACCAAGGGCAGTTGATGACGCAAAGTTAAAGGAATTGGTAAATAAG
GTATTCGAAAATGAAAACAGAAAACCAAAGATTATTGAGTGCAGAGTGATGAGGGATCGG
GAAAAAAAGACCAGCAATGGCGTTGGGCGTTCATTGGGTTTTGCATTCGTTGCATTAACA
AAACATGAAGACTCATTGAAAGCACTTCGTTCACTTAACAATAACCCAGAAATTTTCGGG
GCATTAAAGAGACCAATTGTTGAGTTTTCACTCGAAAATCGTCTCGCAATTGAGGCTCAA
ATGCAGAAAAGAAAGCGGCAATTGACAAGAAATGAGCTAAAAGGAGCTGTTGAGAACACA
GCACCTAAAAAGAAGAGAAAATGGGATGTTCCAAAACCCAAAGTAGAGAAGAGTAAAGTC
ACACCTTCTCCAATTCTGAGTAAAGTAGACCGAAAACCGTTTCAGGGAAGTACAGGGACC
ACATTAAGCGGGAAAAAGCTGAAAATGCCAAAGCATTCTGGCCTAAAAATTCGAAAACGG
AACAAGGGCAATGTTCTGGCACAGATTAAAGAGAGCAAGAAATTGAATCGGCCACCATCT
GTAAGAAATGCCCAAGCAAATAAGAAGCAAGCACGTGCTGCAAGACCTGAACCACAACAA
CCGAAAGAAAAAAGGCAAAGAAGAAGTGGCAAGAGTAAAGACGTCCAAATGGAAAATGAT
TTCAACAAATTAGTTGCTAAGTACACTTCAAAATTCAGTTCAAAATTGAAGGGCAAATGG
CATGAAAGTTAAATGTTAAAAATGACGAATTAATACATTATGGAAAGGTTGTAATTTTTT
AAAGATGGCAACTATGACATACTGTCTTTTTTTTCTTTCTGTGACCAACAGCTGTTGGCA
ACAGGTGTGTACAATCAGCATCATGTTAGCTCTAATATTTATTCTTGTGAGAAACACTTT
AATGTTTACCATACCTCTAATTACAGACAGAAAGCAAATTTGACCTGAAAACAACATTAA
AGCATCAGTTTAGCTTGCCAAATCCAATGTAAAATGACAATACAA
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[4-113] 7.7E-19 - T[209-315] 8.9E-26 - T[330-496] 5.9E-29 - T[557-650] 7.2E-14 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[12-92] 14.061 - T[224-301] 18.052 - T[410-502] 16.074 - T[558-652] 10.787 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[12-102] 1.36E-19 - T[134-211] 1.36E-19 - T[222-306] 4.7E-25 - T[409-497] 2.58E-30 - T[555-634] 2.58E-30 |
| SMART |
RRM_dom (IPR000504) - T[13-88] 7.8E-15 - T[225-297] 7.0E-22 - T[411-483] 3.2E-21 - T[559-648] 8.4E-9 |
| Pfam |
RRM_dom (IPR000504) - T[14-84] 4.4E-14 - T[226-294] 6.6E-18 - T[412-478] 1.9E-15 - T[561-634] 4.6E-6 |
| SMART |
RRM_dom_euk (IPR003954) - T[225-297] 3.6 - T[411-490] 0.41 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RBM28_HUMAN | 40.473 % | 370 | 1.4E-116 |