- Molecular Tool 'citb7i5-MO (Hamada's MO)' >
- Molecular Tool 'cicl16h18-MO (Hamada's MO)' >
- Transcript 'KH2012:KH.C5.632.v1....'
Transcript Model
Transcript Id
KH2012:KH.C5.632.v1.A.SL2-1
Possible name(s)
POC1A; POC1B; THOC3
Gene model
Location
KhC5 [1,665,749 / 1,669,774]
Amino acid sequence
Length: 324
>KH.C5.632.v1.A.SL2-1
FYLVWLKMSSLPQLQQHFKQNSKSKEYSAHSSKVHSVAWNKDGRKLASGSYDQTAAVFIL
DRDKLTKDFSCKGHTDSVDQLCWNPCNSEVFATASGDKTVRIWDARSGKSSSTINTKGEN
INICWSPNGSSIAVGNKEDLVTFIDTKTFRTRNHEQFKVEINEITWNNSNDLFFLTTGLG
TIQIHSYPDMKLIQSLNGHTANCICIEFDSTGKYFATGSADALVNLWDTNELICVRTFSR
LDWPVRTLSFSSNGQLLASASEDLFIDISCVATGEKVCEVPCDSPTFTLAWHPKHKLLAY
ACDDKDKYNRDAGSVKLFGLPTES
Nucleotide sequence
Length: 1,116
>KH2012:KH.C5.632.v1.A.SL2-1
ATTTTTACTTAGTGTGGTTAAAAATGAGTTCCCTGCCACAATTGCAACAGCACTTCAAAC
AAAACAGTAAATCAAAGGAATATTCTGCTCATAGTTCTAAAGTACATTCTGTAGCTTGGA
ATAAAGATGGGAGAAAACTAGCATCTGGTTCTTATGATCAAACAGCCGCTGTTTTTATCC
TCGATCGAGATAAATTGACAAAAGACTTCTCATGCAAAGGTCACACAGATAGTGTTGATC
AATTATGTTGGAACCCTTGTAACTCAGAGGTGTTCGCTACTGCCTCTGGTGACAAAACAG
TTCGCATATGGGATGCACGGTCGGGAAAATCTTCTTCTACAATTAATACAAAAGGTGAGA
ACATCAACATATGTTGGAGTCCTAATGGCTCAAGTATTGCTGTTGGTAATAAAGAAGATC
TTGTTACTTTCATTGACACTAAAACATTTCGAACAAGAAACCATGAGCAGTTTAAAGTTG
AGATAAATGAAATAACATGGAACAACAGCAACGATTTGTTTTTTCTCACAACTGGTTTGG
GAACAATCCAAATACACAGTTACCCAGATATGAAGTTAATCCAATCATTAAATGGTCACA
CAGCCAACTGCATCTGCATTGAATTTGATTCAACTGGAAAATACTTTGCTACTGGTAGCG
CTGATGCATTGGTTAATTTATGGGACACCAATGAACTGATTTGTGTGCGGACTTTTTCAA
GACTTGATTGGCCAGTTCGAACCTTAAGCTTCAGTTCCAATGGCCAACTACTAGCATCAG
CATCTGAGGATTTATTCATAGATATTTCATGTGTCGCTACAGGGGAAAAAGTTTGTGAGG
TTCCATGCGATTCACCCACATTCACGCTTGCTTGGCATCCAAAGCATAAACTCTTGGCGT
ATGCATGTGACGATAAGGATAAATACAACAGAGATGCTGGTTCAGTCAAGTTATTTGGTC
TCCCTACTGAATCGTGATGTTTTGTAGCTTAAAAAACATAAATTCACTGCCAGTAAAGTA
AAACTCTGCTTTTATATCAATCGTAAACGTCAGTATACAATATACTACTATATTGTTTTG
CTAATTTTGAATGGAATAAATTTTCACTCTTTGTAA
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[12-155] 6.4E-31 - T[156-312] 1.9E-27 |
| SMART |
WD40_repeat (IPR001680) - T[20-61] 3.4E-5 - T[64-104] 5.0E-9 - T[107-145] 43.0 - T[189-228] 5.3E-8 - T[231-270] 2.0 - T[273-319] 57.0 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[20-305] 1.35E-56 |
| Pfam |
WD40_repeat (IPR001680) - T[24-54] 8.5E-5 - T[70-104] 4.5E-5 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[27-68] 10.742 - T[71-113] 14.418 - T[196-237] 13.416 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[27-279] 25.576 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[46-60] 5.3E-5 - T[91-105] 5.3E-5 - T[215-229] 5.3E-5 |
| Pfam |
TIF_beta_prop-like (IPR013979) - T[110-219] 9.7E-7 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| POC1A_HUMAN | 27.426 % | 91.7 | 9.31E-21 |
| POC1B_HUMAN | 25.694 % | 83.2 | 1.02E-17 |
| THOC3_HUMAN | 64.939 % | 452 | 1.21E-160 |