- Transcript 'Boleac.CG.SB_v3.S649...' >
- Transcript 'KH2012:KH.C5.632.v1....'
Transcript Model
Transcript Id
KH2012:KH.C5.632.v1.A.ND1-1
Possible name(s)
POC1A; POC1B; THOC3
Gene model
Location
KhC5 [1,665,590 / 1,669,774]
Amino acid sequence
Length: 329
>KH.C5.632.v1.A.ND1-1
FIILDFYLVWLKMSSLPQLQQHFKQNSKSKEYSAHSSKVHSVAWNKDGRKLASGSYDQTA
AVFILDRDKLTKDFSCKGHTDSVDQLCWNPCNSEVFATASGDKTVRIWDARSGKSSSTIN
TKGENINICWSPNGSSIAVGNKEDLVTFIDTKTFRTRNHEQFKVEINEITWNNSNDLFFL
TTGLGTIQIHSYPDMKLIQSLNGHTANCICIEFDSTGKYFATGSADALVNLWDTNELICV
RTFSRLDWPVRTLSFSSNGQLLASASEDLFIDISCVATGEKVCEVPCDSPTFTLAWHPKH
KLLAYACDDKDKYNRDAGSVKLFGLPTES
Nucleotide sequence
Length: 1,275
>KH2012:KH.C5.632.v1.A.ND1-1
CGTAGTAAATAAAGAACGTTTAAAGAAATATAAAACCGTAACCTCATAACTCCTATAGAC
CGTTGCTAGTTGTTTAAAATACGATCAGGATATTTGTATAATACGTCATCCCCCCCAACC
CTACTATAATTATCTTGCCACTTTAATTTATAATTTTAGATTTTTACTTAGTGTGGTTAA
AAATGAGTTCCCTGCCACAATTGCAACAGCACTTCAAACAAAACAGTAAATCAAAGGAAT
ATTCTGCTCATAGTTCTAAAGTACATTCTGTAGCTTGGAATAAAGATGGGAGAAAACTAG
CATCTGGTTCTTATGATCAAACAGCCGCTGTTTTTATCCTCGATCGAGATAAATTGACAA
AAGACTTCTCATGCAAAGGTCACACAGATAGTGTTGATCAATTATGTTGGAACCCTTGTA
ACTCAGAGGTGTTCGCTACTGCCTCTGGTGACAAAACAGTTCGCATATGGGATGCACGGT
CGGGAAAATCTTCTTCTACAATTAATACAAAAGGTGAGAACATCAACATATGTTGGAGTC
CTAATGGCTCAAGTATTGCTGTTGGTAATAAAGAAGATCTTGTTACTTTCATTGACACTA
AAACATTTCGAACAAGAAACCATGAGCAGTTTAAAGTTGAGATAAATGAAATAACATGGA
ACAACAGCAACGATTTGTTTTTTCTCACAACTGGTTTGGGAACAATCCAAATACACAGTT
ACCCAGATATGAAGTTAATCCAATCATTAAATGGTCACACAGCCAACTGCATCTGCATTG
AATTTGATTCAACTGGAAAATACTTTGCTACTGGTAGCGCTGATGCATTGGTTAATTTAT
GGGACACCAATGAACTGATTTGTGTGCGGACTTTTTCAAGACTTGATTGGCCAGTTCGAA
CCTTAAGCTTCAGTTCCAATGGCCAACTACTAGCATCAGCATCTGAGGATTTATTCATAG
ATATTTCATGTGTCGCTACAGGGGAAAAAGTTTGTGAGGTTCCATGCGATTCACCCACAT
TCACGCTTGCTTGGCATCCAAAGCATAAACTCTTGGCGTATGCATGTGACGATAAGGATA
AATACAACAGAGATGCTGGTTCAGTCAAGTTATTTGGTCTCCCTACTGAATCGTGATGTT
TTGTAGCTTAAAAAACATAAATTCACTGCCAGTAAAGTAAAACTCTGCTTTTATATCAAT
CGTAAACGTCAGTATACAATATACTACTATATTGTTTTGCTAATTTTGAATGGAATAAAT
TTTCACTCTTTGTAA
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[17-160] 6.6E-31 - T[161-329] 1.6E-27 |
| SMART |
WD40_repeat (IPR001680) - T[25-66] 3.4E-5 - T[69-109] 5.0E-9 - T[112-150] 43.0 - T[194-233] 5.3E-8 - T[236-275] 2.0 - T[278-324] 57.0 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[25-310] 1.19E-56 |
| Pfam |
WD40_repeat (IPR001680) - T[29-59] 8.7E-5 - T[75-109] 4.6E-5 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[32-284] 25.576 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[32-73] 10.742 - T[76-118] 14.418 - T[201-242] 13.416 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[51-65] 5.5E-5 - T[96-110] 5.5E-5 - T[220-234] 5.5E-5 |
| Pfam |
TIF_beta_prop-like (IPR013979) - T[115-224] 1.1E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| POC1A_HUMAN | 27.426 % | 91.7 | 1.2E-20 |
| POC1B_HUMAN | 25.694 % | 83.2 | 1.3E-17 |
| THOC3_HUMAN | 64.939 % | 452 | 1.28E-160 |