- Transcript 'KH2012:KH.C5.608.v1....' >
- Transcript 'KH2012:KH.C5.608.v1....'
Transcript Model
Transcript Id
KH2012:KH.C5.608.v1.A.SL3-1
Possible name(s)
ELAVL3; RAVER1; RAVER2
Gene model
Location
KhC5 [1,801,993 / 1,812,213]
Amino acid sequence
Length: 862
>KH.C5.608.v1.A.SL3-1
RLVSNVLLLEQMNFNMREQSRTFMEVSQLEFAKRCRRISIKNIAAGVLNQDILELLKPYF
YQQIHIDKNSLSCKAVLLDGSCAARCLEELNGKMFRGQRLSVSLASCDFMLCVTQLPLSF
THDQFLSLITPFGTPERCFLVHSDVTGQSKGYGCVEFTSKESSIKAKNQLNGFKIQNNVL
QVHWLDTIPIHYTGLYSSCLLVEDLPPGFKDQQVLHEVFSQFSTPKFCQLAQCPYNDFAI
VEYADSSQAEESWTKLNGYRIGEFPVKVSFCVPGPRGLVVLNALRASRDLIRGNPCGGLL
PTPVMDHNTNKQLASSLLNHHKDSLNVIPDGLAAVTSKDPQVHQLLNALQNRLTEPQVLN
PSLHNVHHTDIWAQSQLTMNSAMLNHLQHAGRLVGEVPTSLPYRATDGVSHHMSLRSRSG
SISSCDSGAKAEDEVFEPMRRPSQEDSHPFENTYGLRGVNVEDKIDSTFVGKPILRNTGF
GNTEPVMPHHSLLAHTGNNSHPNTLLFLREESQRSESADSAYSGSQGSNSSDYGFPCHAN
RVSNISQCATSNSNLPGHTTRTQGSSLVQEFHHFNSILPPGVQRYPQIPKKVCYDNVLDY
TGSSGAVVTSSGRFSPYPTPGVTSKSQQQQQQVNQPISRELGSNEHMSAFVHCPQSNDVM
RIPRPEINRKDVPTKVPVSVCTSTQPIGGERKFQTLSSLSAVLPHEVEKPTAIIGRTTPH
TRRTRLTPIPGIGHELGADSPTQLQLLGSNLVEGLLGESPRSGGFNASTAGRLLRALNLF
SPTEFVNSPQAVTPIRKRGVGNVLPSPEPSPEAGAYVGQHSQGLGGHYADSYGILGEVMG
LGNSPQHPGMMGLMKRRRSNET
Nucleotide sequence
Length: 3,442
>KH2012:KH.C5.608.v1.A.SL3-1
AAGATTGGTTAGTAATGTTTTGTTGCTAGAACAAATGAATTTCAACATGAGAGAACAAAG
CCGTACTTTTATGGAAGTTTCACAACTTGAATTTGCAAAAAGATGCCGCAGAATATCAAT
TAAAAATATTGCGGCTGGTGTTCTAAATCAGGATATACTTGAGCTATTGAAGCCTTATTT
TTATCAGCAAATTCATATTGACAAGAATAGCTTATCCTGTAAAGCAGTACTTTTGGATGG
ATCATGTGCTGCCCGTTGTTTGGAAGAATTAAACGGGAAAATGTTCCGCGGTCAACGTCT
GTCTGTATCTCTTGCATCATGTGATTTTATGCTGTGTGTCACTCAACTTCCACTTTCTTT
CACTCACGATCAGTTTTTAAGTTTGATCACGCCATTTGGGACTCCAGAACGTTGTTTTCT
TGTGCATAGTGATGTAACTGGGCAAAGCAAAGGTTATGGTTGTGTAGAATTCACAAGCAA
AGAATCGTCTATAAAAGCCAAGAACCAACTCAATGGGTTTAAAATCCAAAACAATGTATT
GCAGGTTCACTGGCTTGATACGATTCCCATCCACTACACCGGACTCTACTCCTCGTGTCT
CCTTGTAGAAGATCTACCACCTGGGTTTAAGGACCAACAAGTCCTGCATGAAGTATTTTC
ACAGTTTTCAACCCCAAAGTTTTGTCAGTTAGCCCAATGTCCTTACAATGACTTTGCGAT
TGTTGAATATGCTGACTCATCACAAGCAGAAGAGTCTTGGACCAAATTAAATGGATACAG
AATCGGAGAATTCCCAGTGAAAGTTTCATTTTGTGTCCCTGGACCTCGAGGTCTTGTTGT
ACTGAATGCTCTACGTGCGTCGAGGGATTTAATCCGAGGAAACCCGTGTGGTGGTCTCCT
ACCAACACCTGTAATGGACCATAATACAAACAAGCAGCTCGCAAGTTCACTGCTCAACCA
TCATAAAGATTCTTTAAATGTTATTCCTGATGGACTGGCTGCAGTTACTTCTAAAGATCC
ACAGGTGCACCAGTTGCTTAATGCATTACAAAACCGGTTAACCGAGCCCCAGGTTCTTAA
CCCATCCCTTCATAATGTCCATCACACTGATATATGGGCACAATCACAACTTACAATGAA
CTCAGCCATGCTTAACCATCTACAACACGCTGGTCGTTTAGTTGGTGAAGTTCCCACCAG
TCTTCCATACAGAGCAACAGATGGTGTTTCACATCATATGTCTCTACGTAGTCGCAGTGG
AAGTATTTCATCCTGTGACTCGGGTGCTAAAGCTGAAGACGAAGTGTTTGAACCAATGAG
GAGACCAAGTCAGGAGGATTCTCATCCATTTGAAAACACATATGGTCTACGAGGTGTAAA
CGTGGAAGACAAAATCGATTCAACTTTTGTTGGCAAACCCATTTTAAGAAACACTGGTTT
CGGCAACACTGAGCCAGTGATGCCACACCATTCATTACTCGCACATACTGGAAACAACTC
GCATCCTAATACATTGCTGTTTCTCAGGGAGGAATCACAGCGAAGTGAAAGTGCTGACTC
AGCATACAGTGGCAGCCAAGGAAGTAATTCATCAGATTATGGTTTTCCATGTCATGCGAA
TCGTGTGTCTAACATATCGCAATGTGCAACTTCTAACAGTAATTTACCTGGTCATACAAC
AAGAACACAGGGAAGCTCACTTGTGCAAGAGTTTCACCATTTCAACTCCATACTGCCACC
TGGAGTTCAACGCTATCCACAAATCCCGAAGAAAGTTTGTTACGATAATGTGTTGGACTA
CACTGGTTCATCTGGTGCTGTAGTGACATCCAGTGGAAGGTTTTCACCGTACCCAACTCC
TGGTGTAACCAGCAAATCTCAACAACAACAACAACAGGTAAACCAACCCATTAGTCGTGA
ACTTGGAAGTAACGAACACATGTCAGCGTTTGTACATTGCCCACAATCTAATGATGTCAT
GAGGATCCCACGTCCGGAAATCAACAGAAAAGATGTTCCAACAAAAGTTCCAGTATCCGT
ATGCACAAGTACTCAACCAATAGGAGGCGAGAGAAAGTTTCAAACACTCAGTAGTTTGTC
TGCTGTGTTACCTCATGAGGTTGAGAAACCAACAGCCATTATTGGCCGAACCACTCCGCA
CACTCGTCGAACCCGTTTGACCCCCATCCCTGGTATCGGGCACGAACTTGGGGCTGATTC
ACCCACCCAACTTCAACTTCTTGGGTCCAACCTGGTGGAAGGGTTGCTAGGGGAATCCCC
TCGTTCCGGGGGTTTCAATGCAAGCACAGCGGGCAGATTACTTCGTGCATTAAACCTGTT
TTCTCCTACAGAGTTTGTGAATTCCCCCCAAGCTGTGACTCCCATTCGTAAGCGAGGTGT
TGGTAACGTTCTTCCATCTCCCGAACCCAGCCCTGAAGCTGGTGCTTATGTAGGCCAGCA
TTCACAGGGGTTGGGGGGTCATTACGCAGATTCTTACGGCATCCTGGGTGAGGTTATGGG
GCTGGGGAATTCCCCGCAACACCCAGGCATGATGGGGTTAATGAAAAGAAGGCGAAGCAA
TGAAACATAATCAGGATAGCTAAGCTTGTTCAATTTCTGCTGCTGCTCTGTGATATTTCA
TCACTAATTATGCCATTCATGTTCAAAACCTTTTTATTGCGTTTTTCTTTTTTTACGTTT
TAGTTCATTGCAGTCATGGCAACTGTTGTCATTCCACTTTTCATTATAAAGTAAATAATT
CATTATATATAATGATAAGAACAATTATAAGTTGCAGCGATACGCCTAATACTGCTTCTC
CCTAAAGTTTTATAAGTTGATTCGAAACACCGCACAATTTTACTTCCTAATTCGCATTGT
GTTTCGTATATTTTCATTGTTCTTATTTCGCTTTACGACATCGGCTTCTCTTTCCCTTAC
GCGGCGGGAAATCAGTCCTCCAATTCTCGTCGACGAATTCTACTTCTCCCTTCGTTCTAA
CTTCAGATTCGACTTTTCTATTCTCGCGTAAGAAAAGTTTTCGCGGCTGCCACACTTTTC
TTTTTTTCACAATAGCTGGGTGCGCTTGTTTTTATTCAATAGCTTTTATCGTCCCGTTCC
GTAACTGCTCACCAAATTTGCCAAAATGGACAAAAATGTCAGTTCCCTTCCGAGGTAGGT
AATTTTAACCGTGTGCCCTTACTAACCGGACAACTTCTCGTTCACTCCGGTTCAGGTATT
CATGTTTGTGTTAAATAAAGCATCACCAGATTCAGGTGTCGTTTATTCAGTACGGACAAA
TAACGTTTTTTCAGATTTTTTCGGGGTAATTTAATAAATGTATAGTACTGTGGGTAAGTG
AGTACATGGTTTTATAATTCTTTGAATGTTCTTCATTTACTTCTAAGTCGGTCGAGAAAA
TATAATGAAAGGTTGTCCCATT
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[25-34] 2.6E-51 - T[36-106] 2.6E-51 - T[107-186] 2.6E-51 - T[197-287] 4.1E-11 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[32-106] 2.31E-6 - T[110-274] 1.49E-25 |
| SMART |
RRM_dom (IPR000504) - T[37-103] 0.025 - T[110-183] 1.3E-14 - T[199-269] 3.5E-5 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[109-187] 11.725 - T[198-273] 8.842 |
| Pfam |
RRM_dom (IPR000504) - T[111-180] 9.6E-14 - T[200-266] 1.7E-4 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RAVR1_HUMAN | 38.783 % | 189 | 5.93E-51 |
| RAVR2_HUMAN | 36.678 % | 193 | 7.63E-52 |