- Transcript 'KH2012:KH.C3.806.v1....' >
- Transcript 'Phmamm.CG.MTP2014.S2...' >
- Transcript 'Cisavi.CG.ENS81.R4.8...' >
- Transcript 'Phfumi.CG.MTP2014.S9...' >
- Transcript 'KH2012:KH.C5.608.v1....'
Transcript Model
Transcript Id
KH2012:KH.C5.608.v1.A.SL1-1
Possible name(s)
ELAVL3; RAVER1; RAVER2
Gene model
Location
KhC5 [1,801,976 / 1,812,213]
Amino acid sequence
Length: 864
>KH.C5.608.v1.A.SL1-1
KRRLVSNVLLLEQMNFNMREQSRTFMEVSQLEFAKRCRRISIKNIAAGVLNQDILELLKP
YFYQQIHIDKNSLSCKAVLLDGSCAARCLEELNGKMFRGQRLSVSLASCDFMLCVTQLPL
SFTHDQFLSLITPFGTPERCFLVHSDVTGQSKGYGCVEFTSKESSIKAKNQLNGFKIQNN
VLQVHWLDTIPIHYTGLYSSCLLVEDLPPGFKDQQVLHEVFSQFSTPKFCQLAQCPYNDF
AIVEYADSSQAEESWTKLNGYRIGEFPVKVSFCVPGPRGLVVLNALRASRDLIRGNPCGG
LLPTPVMDHNTNKQLASSLLNHHKDSLNVIPDGLAAVTSKDPQVHQLLNALQNRLTEPQV
LNPSLHNVHHTDIWAQSQLTMNSAMLNHLQHAGRLVGEVPTSLPYRATDGVSHHMSLRSR
SGSISSCDSGAKAEDEVFEPMRRPSQEDSHPFENTYGLRGVNVEDKIDSTFVGKPILRNT
GFGNTEPVMPHHSLLAHTGNNSHPNTLLFLREESQRSESADSAYSGSQGSNSSDYGFPCH
ANRVSNISQCATSNSNLPGHTTRTQGSSLVQEFHHFNSILPPGVQRYPQIPKKVCYDNVL
DYTGSSGAVVTSSGRFSPYPTPGVTSKSQQQQQQVNQPISRELGSNEHMSAFVHCPQSND
VMRIPRPEINRKDVPTKVPVSVCTSTQPIGGERKFQTLSSLSAVLPHEVEKPTAIIGRTT
PHTRRTRLTPIPGIGHELGADSPTQLQLLGSNLVEGLLGESPRSGGFNASTAGRLLRALN
LFSPTEFVNSPQAVTPIRKRGVGNVLPSPEPSPEAGAYVGQHSQGLGGHYADSYGILGEV
MGLGNSPQHPGMMGLMKRRRSNET
Nucleotide sequence
Length: 3,459
>KH2012:KH.C5.608.v1.A.SL1-1
GTGAAACGTTAAAAAAGAAGATTGGTTAGTAATGTTTTGTTGCTAGAACAAATGAATTTC
AACATGAGAGAACAAAGCCGTACTTTTATGGAAGTTTCACAACTTGAATTTGCAAAAAGA
TGCCGCAGAATATCAATTAAAAATATTGCGGCTGGTGTTCTAAATCAGGATATACTTGAG
CTATTGAAGCCTTATTTTTATCAGCAAATTCATATTGACAAGAATAGCTTATCCTGTAAA
GCAGTACTTTTGGATGGATCATGTGCTGCCCGTTGTTTGGAAGAATTAAACGGGAAAATG
TTCCGCGGTCAACGTCTGTCTGTATCTCTTGCATCATGTGATTTTATGCTGTGTGTCACT
CAACTTCCACTTTCTTTCACTCACGATCAGTTTTTAAGTTTGATCACGCCATTTGGGACT
CCAGAACGTTGTTTTCTTGTGCATAGTGATGTAACTGGGCAAAGCAAAGGTTATGGTTGT
GTAGAATTCACAAGCAAAGAATCGTCTATAAAAGCCAAGAACCAACTCAATGGGTTTAAA
ATCCAAAACAATGTATTGCAGGTTCACTGGCTTGATACGATTCCCATCCACTACACCGGA
CTCTACTCCTCGTGTCTCCTTGTAGAAGATCTACCACCTGGGTTTAAGGACCAACAAGTC
CTGCATGAAGTATTTTCACAGTTTTCAACCCCAAAGTTTTGTCAGTTAGCCCAATGTCCT
TACAATGACTTTGCGATTGTTGAATATGCTGACTCATCACAAGCAGAAGAGTCTTGGACC
AAATTAAATGGATACAGAATCGGAGAATTCCCAGTGAAAGTTTCATTTTGTGTCCCTGGA
CCTCGAGGTCTTGTTGTACTGAATGCTCTACGTGCGTCGAGGGATTTAATCCGAGGAAAC
CCGTGTGGTGGTCTCCTACCAACACCTGTAATGGACCATAATACAAACAAGCAGCTCGCA
AGTTCACTGCTCAACCATCATAAAGATTCTTTAAATGTTATTCCTGATGGACTGGCTGCA
GTTACTTCTAAAGATCCACAGGTGCACCAGTTGCTTAATGCATTACAAAACCGGTTAACC
GAGCCCCAGGTTCTTAACCCATCCCTTCATAATGTCCATCACACTGATATATGGGCACAA
TCACAACTTACAATGAACTCAGCCATGCTTAACCATCTACAACACGCTGGTCGTTTAGTT
GGTGAAGTTCCCACCAGTCTTCCATACAGAGCAACAGATGGTGTTTCACATCATATGTCT
CTACGTAGTCGCAGTGGAAGTATTTCATCCTGTGACTCGGGTGCTAAAGCTGAAGACGAA
GTGTTTGAACCAATGAGGAGACCAAGTCAGGAGGATTCTCATCCATTTGAAAACACATAT
GGTCTACGAGGTGTAAACGTGGAAGACAAAATCGATTCAACTTTTGTTGGCAAACCCATT
TTAAGAAACACTGGTTTCGGCAACACTGAGCCAGTGATGCCACACCATTCATTACTCGCA
CATACTGGAAACAACTCGCATCCTAATACATTGCTGTTTCTCAGGGAGGAATCACAGCGA
AGTGAAAGTGCTGACTCAGCATACAGTGGCAGCCAAGGAAGTAATTCATCAGATTATGGT
TTTCCATGTCATGCGAATCGTGTGTCTAACATATCGCAATGTGCAACTTCTAACAGTAAT
TTACCTGGTCATACAACAAGAACACAGGGAAGCTCACTTGTGCAAGAGTTTCACCATTTC
AACTCCATACTGCCACCTGGAGTTCAACGCTATCCACAAATCCCGAAGAAAGTTTGTTAC
GATAATGTGTTGGACTACACTGGTTCATCTGGTGCTGTAGTGACATCCAGTGGAAGGTTT
TCACCGTACCCAACTCCTGGTGTAACCAGCAAATCTCAACAACAACAACAACAGGTAAAC
CAACCCATTAGTCGTGAACTTGGAAGTAACGAACACATGTCAGCGTTTGTACATTGCCCA
CAATCTAATGATGTCATGAGGATCCCACGTCCGGAAATCAACAGAAAAGATGTTCCAACA
AAAGTTCCAGTATCCGTATGCACAAGTACTCAACCAATAGGAGGCGAGAGAAAGTTTCAA
ACACTCAGTAGTTTGTCTGCTGTGTTACCTCATGAGGTTGAGAAACCAACAGCCATTATT
GGCCGAACCACTCCGCACACTCGTCGAACCCGTTTGACCCCCATCCCTGGTATCGGGCAC
GAACTTGGGGCTGATTCACCCACCCAACTTCAACTTCTTGGGTCCAACCTGGTGGAAGGG
TTGCTAGGGGAATCCCCTCGTTCCGGGGGTTTCAATGCAAGCACAGCGGGCAGATTACTT
CGTGCATTAAACCTGTTTTCTCCTACAGAGTTTGTGAATTCCCCCCAAGCTGTGACTCCC
ATTCGTAAGCGAGGTGTTGGTAACGTTCTTCCATCTCCCGAACCCAGCCCTGAAGCTGGT
GCTTATGTAGGCCAGCATTCACAGGGGTTGGGGGGTCATTACGCAGATTCTTACGGCATC
CTGGGTGAGGTTATGGGGCTGGGGAATTCCCCGCAACACCCAGGCATGATGGGGTTAATG
AAAAGAAGGCGAAGCAATGAAACATAATCAGGATAGCTAAGCTTGTTCAATTTCTGCTGC
TGCTCTGTGATATTTCATCACTAATTATGCCATTCATGTTCAAAACCTTTTTATTGCGTT
TTTCTTTTTTTACGTTTTAGTTCATTGCAGTCATGGCAACTGTTGTCATTCCACTTTTCA
TTATAAAGTAAATAATTCATTATATATAATGATAAGAACAATTATAAGTTGCAGCGATAC
GCCTAATACTGCTTCTCCCTAAAGTTTTATAAGTTGATTCGAAACACCGCACAATTTTAC
TTCCTAATTCGCATTGTGTTTCGTATATTTTCATTGTTCTTATTTCGCTTTACGACATCG
GCTTCTCTTTCCCTTACGCGGCGGGAAATCAGTCCTCCAATTCTCGTCGACGAATTCTAC
TTCTCCCTTCGTTCTAACTTCAGATTCGACTTTTCTATTCTCGCGTAAGAAAAGTTTTCG
CGGCTGCCACACTTTTCTTTTTTTCACAATAGCTGGGTGCGCTTGTTTTTATTCAATAGC
TTTTATCGTCCCGTTCCGTAACTGCTCACCAAATTTGCCAAAATGGACAAAAATGTCAGT
TCCCTTCCGAGGTAGGTAATTTTAACCGTGTGCCCTTACTAACCGGACAACTTCTCGTTC
ACTCCGGTTCAGGTATTCATGTTTGTGTTAAATAAAGCATCACCAGATTCAGGTGTCGTT
TATTCAGTACGGACAAATAACGTTTTTTCAGATTTTTTCGGGGTAATTTAATAAATGTAT
AGTACTGTGGGTAAGTGAGTACATGGTTTTATAATTCTTTGAATGTTCTTCATTTACTTC
TAAGTCGGTCGAGAAAATATAATGAAAGGTTGTCCCATT
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[27-36] 2.6E-51 - T[38-108] 2.6E-51 - T[109-188] 2.6E-51 - T[199-289] 4.1E-11 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[33-108] 2.31E-6 - T[112-276] 1.42E-25 |
| SMART |
RRM_dom (IPR000504) - T[39-105] 0.025 - T[112-185] 1.3E-14 - T[201-271] 3.5E-5 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[111-189] 11.725 - T[200-275] 8.842 |
| Pfam |
RRM_dom (IPR000504) - T[113-182] 9.6E-14 - T[202-268] 1.7E-4 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RAVR1_HUMAN | 38.783 % | 189 | 6.68E-51 |
| RAVR2_HUMAN | 36.678 % | 192 | 8.43E-52 |