- Transcript 'KH2012:KH.C4.547.v1....' >
- Transcript 'KH2012:KH.C1.1144.v1...' >
- Transcript 'KH2012:KH.C5.25.v1.A...' >
- Transcript 'Harore.CG.MTP2014.S4...' >
- Transcript 'KH2012:KH.C5.54.v3.A...'
Transcript Model
Transcript Id
KH2012:KH.C5.54.v3.A.ND3-1
Possible name(s)
ERCC8; KATNB1; WDR5
Gene model
Location
KhC5 [3,015,710 / 3,019,060]
Amino acid sequence
Length: 225
>KH.C5.54.v3.A.ND3-1
TSHFEPSAENKALLNNTVTEFVRQFYLQYFYIHSEDNRVLLWDVRQAKAVLHNLDQHNGD
TTASSAAVGTAHTGSVNSILFSEDGRYLLTFATDQRLHLWNTDTGKNTLVNYGRIDNPSK
HRYLGMTLYKGGATSSIAFVPSGRQINMLDFYTGAHLRRLAGHFSDVRCCEYNPYRQELY
SAGQTSNVLIWSPAEPDSEATVPSNGQNLAPTASSLLLDNWSDSD
Nucleotide sequence
Length: 2,077
>KH2012:KH.C5.54.v3.A.ND3-1
CGCCTGCCCGCATTATCACAGCGGGTGCAAAGAGAAAGCAATATTCCCAGCACCGTTGAG
TTATGCGGAAATTTTGAACCCAACTTCCGCGTTTGAGCTGCACGCGGCCATTTCTCTTCA
ATGGCCGTTTGCTTGTTTCCCGGAATTCGAAATAAGTTTTGCCGCAAGTTGATACTCAGT
TCCATTATTATACATGCATTATCATTACTTATCCACGGTGCCGGTTATTTTTACCATACT
ACAGTTATGCGTGGTTCGTATATAAACACATAAGTTAAATACTGTATGTTGGTCTATAGA
TTGCGATATTTTTACTTGACATTTCTAAGTTAGCAACGGTGGGCGTCATGAATTCTTAAC
CGCCGTTTTACGAGATAAGCTAGTCAATCTATTGGACGAGCGATGTTTGAATCATAGCGT
CGGCGTTAACTACGCAACAGTGTGTTCAGTGACGTAACAACTGGGTCATTCTTGTGTGTC
GAAGGCGAGGTCTATCTGTGGTCTCATGTTTGCGTGTTCCCATCCCGTTATATTCGTCGT
CGAATGTTAATGATTCACTTTTCGTTCCTTGTTTGCCGGTACCCACTTTTCAAAAGCGCG
GATCGCCGCTTTTGCGTTCATTTTCCCAATAAGCGGATTAAGTAAAACTGTCGTGTGTGT
AACGTGAACGCTTGAATATGTAACTCCCAAGTGAATTCTAATCGCGACAGTTTCCGGGTA
GAAATTGTTAACTTTCTCCCGCCAGCCCGCAGGTAAATCTTTCAGCTTGTCGCGCTGCGC
CACCTGGCGGAAATGCCAGAAGCTGTGGGCTTTGCCTAAAGGTTGACGAGAATCAGACGC
CAAAAACTCAAATAAACCTCACATTTTGAGCCATCAGCGGAAAACAAAGCACTCCTAAAT
AACACTGTCACTGAATTTGTGAGACAATTTTATCTTCAATATTTTTACATTCACAGCGAA
GACAATCGGGTTCTGTTATGGGACGTCCGACAAGCAAAGGCAGTGTTGCACAACCTCGAT
CAACACAACGGGGACACCACGGCAAGCTCAGCTGCAGTCGGCACAGCTCACACTGGAAGT
GTGAACAGCATTCTATTCAGTGAGGATGGTCGGTATCTACTCACATTTGCTACCGACCAA
CGACTGCATTTGTGGAATACTGATACCGGCAAAAATACGTTAGTGAACTACGGTCGAATT
GACAACCCATCAAAACATCGCTACCTCGGTATGACGTTATACAAGGGCGGTGCCACTTCT
TCAATAGCGTTCGTGCCTTCGGGTCGCCAAATTAACATGTTGGATTTCTACACTGGTGCT
CACCTGCGCCGCTTAGCGGGACACTTCAGCGACGTAAGGTGCTGCGAATACAACCCTTAT
CGACAGGAATTGTATTCCGCTGGTCAAACGTCCAACGTTCTGATTTGGAGCCCAGCAGAA
CCTGATTCGGAAGCTACAGTGCCATCTAACGGTCAGAACCTGGCGCCCACCGCATCATCT
TTGCTGTTAGATAACTGGAGTGACAGCGATTGAATAAAGCCTTTCTTACATGGTTGGCTT
AATAAAGTTTGCGGAATTGTGGCCGCAGTTATCCATAGAAGAATGAAATTTTAGTTTTCG
AAGGTGGAAATAGGCAGGGGGGACTCTTTCTGTGCAAACAATTATAGATGTCAAATGTGT
TTGACGCTGTATTTGCATTGCTATACGTGTTCACATATTTCTGTTTTCACTTGCTTGTAT
TGGCGCCCGTTACTGATTGAATTCTCGTGAATATACGAATCTAGTTTCATAGTCCCGAAT
GTCATTTTGTTAATTAAATAGTTTAAATAGATCCGTAGACGTAACATGCTCATATTGTGA
CATAACGTCTACATTCAGGTTTCCTGTTGCTAATAGTAGCTAGTAAGCTGTCTGTTCCTT
GTGAAAGTTTACTCTTGTTTCCCGCTATTTACTATTTCGTCCCGTTGATCATTAACGTAG
GTATATGGTATGTTGTGTAAGAGAGAACAGTAACTTCCGTGACAACGACAGTTTGTTTGC
CACTTTTAAATATTTTGTTATTTTGAATTTCGAGTAA
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[29-195] 4.3E-43 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[29-204] 1.59E-21 |
| SMART |
WD40_repeat (IPR001680) - T[62-101] 7.0E-4 - T[153-192] 0.0022 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[69-201] 14.081 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[69-110] 13.382 - T[160-192] 8.804 |
| Pfam |
WD40_repeat (IPR001680) - T[70-101] 0.0032 - T[156-192] 0.059 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ERCC8_HUMAN | 41.463 % | 149 | 2.76E-43 |