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  1. Transcript 'KH2012:KH.L14.2.v1.A...' > 
  2. Transcript 'KH2012:KH.C4.140.v2....' > 
  3. Transcript 'KH2012:KH.C5.54.v2.R...'

Transcript Model

Transcript Id

KH2012:KH.C5.54.v2.R.ND1-1

Possible name(s)

ERCC8; KATNB1; WDR5

Gene model

KH2012:KH.C5.54

Location

KhC5 [3,015,710 / 3,019,756]

Sequences

Amino acid sequence

Length: 199

>KH.C5.54.v2.R.ND1-1
QLSITAQSEDNRVLLWDVRQAKAVLHNLDQHNGDTTASSAAVGTAHTGSVNSILFSEDGR
YLLTFATDQRLHLWNTDTGKNTLVNYGRIDNPSKHRYLGMTLYKGGATSSIAFVPSGRQI
NMLDFYTGAHLRRLAGHFSDVRCCEYNPYRQELYSAGQTSNVLIWSPAEPDSEATVPSNG
QNLAPTASSLLLDNWSDSD

Nucleotide sequence

Length: 1,208

>KH2012:KH.C5.54.v2.R.ND1-1
AGACGGACAAATAGATGATGCGTATATGCTAGCACGTAAATACCTTACGTAGCTCCATAA
ATAACAACTCAGTATCACTGCACAGAGCGAAGACAATCGGGTTCTGTTATGGGACGTCCG
ACAAGCAAAGGCAGTGTTGCACAACCTCGATCAACACAACGGGGACACCACGGCAAGCTC
AGCTGCAGTCGGCACAGCTCACACTGGAAGTGTGAACAGCATTCTATTCAGTGAGGATGG
TCGGTATCTACTCACATTTGCTACCGACCAACGACTGCATTTGTGGAATACTGATACCGG
CAAAAATACGTTAGTGAACTACGGTCGAATTGACAACCCATCAAAACATCGCTACCTCGG
TATGACGTTATACAAGGGCGGTGCCACTTCTTCAATAGCGTTCGTGCCTTCGGGTCGCCA
AATTAACATGTTGGATTTCTACACTGGTGCTCACCTGCGCCGCTTAGCGGGACACTTCAG
CGACGTAAGGTGCTGCGAATACAACCCTTATCGACAGGAATTGTATTCCGCTGGTCAAAC
GTCCAACGTTCTGATTTGGAGCCCAGCAGAACCTGATTCGGAAGCTACAGTGCCATCTAA
CGGTCAGAACCTGGCGCCCACCGCATCATCTTTGCTGTTAGATAACTGGAGTGACAGCGA
TTGAATAAAGCCTTTCTTACATGGTTGGCTTAATAAAGTTTGCGGAATTGTGGCCGCAGT
TATCCATAGAAGAATGAAATTTTAGTTTTCGAAGGTGGAAATAGGCAGGGGGGACTCTTT
CTGTGCAAACAATTATAGATGTCAAATGTGTTTGACGCTGTATTTGCATTGCTATACGTG
TTCACATATTTCTGTTTTCACTTGCTTGTATTGGCGCCCGTTACTGATTGAATTCTCGTG
AATATACGAATCTAGTTTCATAGTCCCGAATGTCATTTTGTTAATTAAATAGTTTAAATA
GATCCGTAGACGTAACATGCTCATATTGTGACATAACGTCTACATTCAGGTTTCCTGTTG
CTAATAGTAGCTAGTAAGCTGTCTGTTCCTTGTGAAAGTTTACTCTTGTTTCCCGCTATT
TACTATTTCGTCCCGTTGATCATTAACGTAGGTATATGGTATGTTGTGTAAGAGAGAACA
GTAACTTCCGTGACAACGACAGTTTGTTTGCCACTTTTAAATATTTTGTTATTTTGAATT
TCGAGTAA

InterProScan

ProSiteProfiles
WD40_repeat_dom (IPR017986) - T[1-175] 15.557
Gene3D
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[3-169] 2.5E-43
SUPERFAMILY
WD40_repeat_dom_sf (IPR036322) - T[8-176] 1.23E-20
SMART
WD40_repeat (IPR001680) - T[36-75] 7.0E-4 - T[127-166] 0.0022
Pfam
WD40_repeat (IPR001680) - T[43-75] 0.0025 - T[130-166] 0.048
ProSiteProfiles
WD40_repeat (IPR001680) - T[43-84] 13.382 - T[134-166] 8.804

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
ERCC8_HUMAN 41 % 149 1.08E-43