- Transcript 'KH2012:KH.C9.252.v1....' >
- Transcript 'KH2012:KH.C4.249.v1....' >
- Transcript 'KH2012:KH.L96.5.v1.A...' >
- Transcript 'KH2012:KH.C5.54.v1.A...'
Transcript Model
Transcript Id
KH2012:KH.C5.54.v1.A.SL2-1
Possible name(s)
ERCC8; KATNB1; WDR5
Gene model
Location
KhC5 [3,015,710 / 3,027,361]
Amino acid sequence
Length: 318
>KH.C5.54.v1.A.SL2-1
PRGLTQNSYYCKTRQKKYMHKSTMSSIQWYPHDTGIFVTSAFDGTIKIWDTNRLRPAETL
EINCVIHNHHLSPISTQHSLIAAASADHIRLADIRSSATSHTLKGHRDTVLCVKWSPKDE
YVLASGSEDNRVLLWDVRQAKAVLHNLDQHNGDTTASSAAVGTAHTGSVNSILFSEDGRY
LLTFATDQRLHLWNTDTGKNTLVNYGRIDNPSKHRYLGMTLYKGGATSSIAFVPSGRQIN
MLDFYTGAHLRRLAGHFSDVRCCEYNPYRQELYSAGQTSNVLIWSPAEPDSEATVPSNGQ
NLAPTASSLLLDNWSDSD
Nucleotide sequence
Length: 1,836
>KH2012:KH.C5.54.v1.A.SL2-1
ATTTTGAATAAAAAACATTTTCAGACTATGACTAAATGGTGTAAGCATTGTTTAAAATGA
AACAATTTCTCAAAGTCTTGAAACATGTCCTACTGCACAACATTACATTCAGATAGAAGT
TTAGGGACTCGCAACCCAAGGTGGTTATGTAGATCAATAGAACTGGGTCGTATTTTGAGG
TTGACACTGTCGGAGACACGAATTCAATGCATCCCACCAAACAGTATTTCTGCAATGGAT
TTGGAGAAGACCGAATGCAGATATTTGATATGTGCCGGGTCAGATAAAAAAATCACCATA
TATGATACATGGAAACTAGCAAGAGATGAGAGTAGCCAAGGGGGCTTACCCAAAATAGCT
ACTATTGCAAAACAAGGCAGAAAAAATACATGCATAAATCTACAATGAGTTCAATACAAT
GGTATCCCCATGATACCGGTATCTTTGTAACATCTGCGTTTGATGGAACAATTAAAATAT
GGGACACAAATAGATTGAGACCTGCAGAAACATTGGAGATCAACTGTGTTATTCATAATC
ACCATCTTTCTCCAATATCCACCCAACACTCTCTGATAGCAGCTGCATCTGCAGACCACA
TAAGGCTTGCTGATATTCGATCTTCTGCTACTTCACATACTCTAAAAGGTCACCGTGATA
CCGTGCTCTGCGTGAAATGGTCACCAAAAGATGAGTATGTTCTCGCGAGTGGAAGCGAAG
ACAATCGGGTTCTGTTATGGGACGTCCGACAAGCAAAGGCAGTGTTGCACAACCTCGATC
AACACAACGGGGACACCACGGCAAGCTCAGCTGCAGTCGGCACAGCTCACACTGGAAGTG
TGAACAGCATTCTATTCAGTGAGGATGGTCGGTATCTACTCACATTTGCTACCGACCAAC
GACTGCATTTGTGGAATACTGATACCGGCAAAAATACGTTAGTGAACTACGGTCGAATTG
ACAACCCATCAAAACATCGCTACCTCGGTATGACGTTATACAAGGGCGGTGCCACTTCTT
CAATAGCGTTCGTGCCTTCGGGTCGCCAAATTAACATGTTGGATTTCTACACTGGTGCTC
ACCTGCGCCGCTTAGCGGGACACTTCAGCGACGTAAGGTGCTGCGAATACAACCCTTATC
GACAGGAATTGTATTCCGCTGGTCAAACGTCCAACGTTCTGATTTGGAGCCCAGCAGAAC
CTGATTCGGAAGCTACAGTGCCATCTAACGGTCAGAACCTGGCGCCCACCGCATCATCTT
TGCTGTTAGATAACTGGAGTGACAGCGATTGAATAAAGCCTTTCTTACATGGTTGGCTTA
ATAAAGTTTGCGGAATTGTGGCCGCAGTTATCCATAGAAGAATGAAATTTTAGTTTTCGA
AGGTGGAAATAGGCAGGGGGGACTCTTTCTGTGCAAACAATTATAGATGTCAAATGTGTT
TGACGCTGTATTTGCATTGCTATACGTGTTCACATATTTCTGTTTTCACTTGCTTGTATT
GGCGCCCGTTACTGATTGAATTCTCGTGAATATACGAATCTAGTTTCATAGTCCCGAATG
TCATTTTGTTAATTAAATAGTTTAAATAGATCCGTAGACGTAACATGCTCATATTGTGAC
ATAACGTCTACATTCAGGTTTCCTGTTGCTAATAGTAGCTAGTAAGCTGTCTGTTCCTTG
TGAAAGTTTACTCTTGTTTCCCGCTATTTACTATTTCGTCCCGTTGATCATTAACGTAGG
TATATGGTATGTTGTGTAAGAGAGAACAGTAACTTCCGTGACAACGACAGTTTGTTTGCC
ACTTTTAAATATTTTGTTATTTTGAATTTCGAGTAA
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[2-288] 7.7E-91 |
| SMART |
WD40_repeat (IPR001680) - T[11-50] 0.0011 - T[96-136] 1.2E-9 - T[155-194] 7.0E-4 - T[246-285] 0.0022 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[16-289] 1.43E-43 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[17-294] 28.95 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[17-59] 11.544 - T[103-145] 15.187 - T[162-203] 13.382 - T[253-285] 8.804 |
| Pfam |
WD40_repeat (IPR001680) - T[26-50] 0.036 - T[100-136] 9.2E-8 - T[163-194] 0.0052 - T[249-285] 0.098 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[37-51] 1.6E-5 - T[123-137] 1.6E-5 - T[181-195] 1.6E-5 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[123-137] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ERCC8_HUMAN | 41.486 % | 267 | 1.38E-87 |