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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.C5.202.v1....'
  2. Region 'REG00000362'
  3. Molecular Tool 'Mesp>CaveolinP189L'
  4. Transcript 'Boleac.CG.SB_v3.S127...'
  5. Transcript 'KH2012:KH.C5.502.v1....'

Transcript Model

Transcript Id

KH2012:KH.C5.502.v1.A.SL1-1

Possible name(s)

NKX6-1; NKX6-2; NKX6-3

Location

KhC5 [41,877 / 46,234]

Sequences

Amino acid sequence

Length: 459

>KH.C5.502.v1.A.SL1-1
SCLMSMEESGSFAFGNNAAVAMSAFQAAASAGMMEHKTNNGMPFYHYPAFQHNNQNQGLR
NQHTNLQNGTPFGINDILNRPIAASLTAQDSTHHLSSIAGNAQSNPRFTSSIGHGSMMAA
MYLGGSGIANAVSTSSGSRYPKPLADLPGRPPIYWPGMMTDDWREKLAMPGSPSTIVMEK
YGRKKHTRPTFSGQQIFALEKTFEQSKYLAGPERARLAYSLAMTESQVKVWFQNRRTKWR
KRHAAEMATAKKRQDGEISLKVKERERGESEGQRESVSGENSTQRPFNDTDGMTASGQIF
ENAADSFSESSAGSRENSRRCSEHEGSDSADDDNKSMFSHQNHAADVDAQETEKERQFKA
LLYGGYKVRSDMYSGTSSSPTQNYITQFSMCPSDMVQHGGLQGLSILPMNKGAAAAICGV
ASGSDNFSSYVNSPATPPHDPSKPMTSASTLSEANIAKY

Nucleotide sequence

Length: 1,639

>KH2012:KH.C5.502.v1.A.SL1-1
GTCGTTTGTTAGATTTGAATAGGTTATTGTTGATCTTGTTTGATGTCCATGGAAGAATCT
GGTTCTTTTGCGTTTGGGAACAACGCTGCAGTTGCGATGAGCGCTTTTCAGGCGGCGGCA
TCTGCAGGAATGATGGAACATAAGACAAACAACGGAATGCCCTTCTACCACTACCCTGCA
TTTCAACACAACAACCAGAATCAAGGTCTTCGAAATCAACACACCAACTTGCAAAATGGA
ACCCCCTTTGGTATAAACGACATTTTAAACCGGCCAATCGCTGCAAGCTTAACTGCGCAA
GATTCTACTCACCACTTGAGCAGTATCGCTGGAAATGCCCAATCAAACCCCCGGTTTACG
TCAAGTATCGGTCACGGCTCTATGATGGCCGCCATGTACTTGGGAGGATCTGGAATTGCA
AATGCTGTTTCCACTTCGAGCGGATCAAGATATCCGAAACCACTCGCCGACCTTCCCGGT
CGCCCACCAATATATTGGCCTGGTATGATGACTGATGATTGGAGAGAAAAGTTAGCGATG
CCAGGTTCACCTTCGACCATCGTGATGGAAAAGTACGGACGAAAGAAACATACACGACCT
ACTTTCTCAGGGCAGCAGATCTTTGCGTTGGAAAAAACCTTTGAACAAAGCAAGTACCTG
GCTGGACCTGAACGAGCTCGGTTGGCATATTCACTTGCAATGACGGAGTCGCAAGTTAAG
GTTTGGTTCCAAAACAGGCGAACAAAATGGCGGAAGCGTCACGCTGCTGAGATGGCAACC
GCTAAGAAACGACAAGATGGTGAAATATCTCTAAAGGTAAAGGAGCGTGAACGCGGTGAA
AGTGAAGGACAAAGAGAATCTGTGAGTGGCGAAAATTCTACACAACGACCTTTTAACGAT
ACGGATGGTATGACGGCATCGGGTCAAATCTTTGAGAATGCGGCAGACAGCTTTTCCGAA
TCCAGCGCTGGGTCGCGTGAAAATTCAAGAAGATGTAGCGAGCATGAAGGAAGTGATAGC
GCTGATGACGACAATAAGTCAATGTTTTCACACCAAAATCATGCTGCAGATGTTGATGCA
CAAGAAACAGAAAAGGAGAGACAATTTAAAGCTTTGTTGTATGGGGGATATAAAGTGCGC
AGTGATATGTATAGTGGAACATCCAGCTCACCAACACAGAACTACATCACACAATTCTCC
ATGTGTCCAAGTGATATGGTGCAACATGGTGGTTTGCAAGGGTTGAGTATTTTGCCCATG
AACAAAGGGGCAGCAGCTGCGATATGTGGTGTGGCATCGGGATCAGATAATTTTTCATCA
TATGTTAATTCACCAGCCACCCCACCACATGACCCCAGTAAGCCGATGACATCAGCATCT
ACTTTAAGTGAAGCTAACATTGCAAAATATTGACATCTGCTTTGTACAAGTTATTATTGA
AAATTTCGCAATTTAACAGTCTCTTCAGGGTGCGTCATTTTACCCACGTGTCCTCTATAA
CTGCCATCACCCACCGCAAGTACAATAGTTCATATGTCCAGTTGATTATACCTTACCAGT
ATTGTTATAGCTTTATAGAGTTTAAAAGCGACACTTGGTGTCATGTTTATATATGTTACA
TTAAAACCGAGCAAGTGGC

InterProScan

SUPERFAMILY
Homeobox-like_sf (IPR009057) - T[168-242] 3.94E-22
ProSiteProfiles
Homeobox_dom (IPR001356) - T[182-242] 19.629
SMART
Homeobox_dom (IPR001356) - T[184-246] 2.1E-21
CDD
Homeobox_dom (IPR001356) - T[185-243] 4.48985E-20
Pfam
Homeobox_dom (IPR001356) - T[185-241] 1.1E-19
PRINTS
Homeobox_metazoa (IPR020479) - T[206-217] 2.6E-5 - T[221-231] 2.6E-5 - T[231-240] 2.6E-5
ProSitePatterns
Homeobox_CS (IPR017970) - T[217-240] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
NKX62_HUMAN 55.224 % 202 6.13E-62
NKX61_HUMAN 50 % 202 9.67E-61
NKX63_HUMAN 45.604 % 138 9.84E-38