- Transcript 'Boleac.CG.SB_v3.S127...' >
- Transcript 'KH2012:KH.C5.502.v1....'
Transcript Model
Transcript Id
KH2012:KH.C5.502.v1.A.SL1-1
Possible name(s)
NKX6-1; NKX6-2; NKX6-3
Gene model
Location
KhC5 [41,877 / 46,234]
Amino acid sequence
Length: 459
>KH.C5.502.v1.A.SL1-1
SCLMSMEESGSFAFGNNAAVAMSAFQAAASAGMMEHKTNNGMPFYHYPAFQHNNQNQGLR
NQHTNLQNGTPFGINDILNRPIAASLTAQDSTHHLSSIAGNAQSNPRFTSSIGHGSMMAA
MYLGGSGIANAVSTSSGSRYPKPLADLPGRPPIYWPGMMTDDWREKLAMPGSPSTIVMEK
YGRKKHTRPTFSGQQIFALEKTFEQSKYLAGPERARLAYSLAMTESQVKVWFQNRRTKWR
KRHAAEMATAKKRQDGEISLKVKERERGESEGQRESVSGENSTQRPFNDTDGMTASGQIF
ENAADSFSESSAGSRENSRRCSEHEGSDSADDDNKSMFSHQNHAADVDAQETEKERQFKA
LLYGGYKVRSDMYSGTSSSPTQNYITQFSMCPSDMVQHGGLQGLSILPMNKGAAAAICGV
ASGSDNFSSYVNSPATPPHDPSKPMTSASTLSEANIAKY
Nucleotide sequence
Length: 1,639
>KH2012:KH.C5.502.v1.A.SL1-1
GTCGTTTGTTAGATTTGAATAGGTTATTGTTGATCTTGTTTGATGTCCATGGAAGAATCT
GGTTCTTTTGCGTTTGGGAACAACGCTGCAGTTGCGATGAGCGCTTTTCAGGCGGCGGCA
TCTGCAGGAATGATGGAACATAAGACAAACAACGGAATGCCCTTCTACCACTACCCTGCA
TTTCAACACAACAACCAGAATCAAGGTCTTCGAAATCAACACACCAACTTGCAAAATGGA
ACCCCCTTTGGTATAAACGACATTTTAAACCGGCCAATCGCTGCAAGCTTAACTGCGCAA
GATTCTACTCACCACTTGAGCAGTATCGCTGGAAATGCCCAATCAAACCCCCGGTTTACG
TCAAGTATCGGTCACGGCTCTATGATGGCCGCCATGTACTTGGGAGGATCTGGAATTGCA
AATGCTGTTTCCACTTCGAGCGGATCAAGATATCCGAAACCACTCGCCGACCTTCCCGGT
CGCCCACCAATATATTGGCCTGGTATGATGACTGATGATTGGAGAGAAAAGTTAGCGATG
CCAGGTTCACCTTCGACCATCGTGATGGAAAAGTACGGACGAAAGAAACATACACGACCT
ACTTTCTCAGGGCAGCAGATCTTTGCGTTGGAAAAAACCTTTGAACAAAGCAAGTACCTG
GCTGGACCTGAACGAGCTCGGTTGGCATATTCACTTGCAATGACGGAGTCGCAAGTTAAG
GTTTGGTTCCAAAACAGGCGAACAAAATGGCGGAAGCGTCACGCTGCTGAGATGGCAACC
GCTAAGAAACGACAAGATGGTGAAATATCTCTAAAGGTAAAGGAGCGTGAACGCGGTGAA
AGTGAAGGACAAAGAGAATCTGTGAGTGGCGAAAATTCTACACAACGACCTTTTAACGAT
ACGGATGGTATGACGGCATCGGGTCAAATCTTTGAGAATGCGGCAGACAGCTTTTCCGAA
TCCAGCGCTGGGTCGCGTGAAAATTCAAGAAGATGTAGCGAGCATGAAGGAAGTGATAGC
GCTGATGACGACAATAAGTCAATGTTTTCACACCAAAATCATGCTGCAGATGTTGATGCA
CAAGAAACAGAAAAGGAGAGACAATTTAAAGCTTTGTTGTATGGGGGATATAAAGTGCGC
AGTGATATGTATAGTGGAACATCCAGCTCACCAACACAGAACTACATCACACAATTCTCC
ATGTGTCCAAGTGATATGGTGCAACATGGTGGTTTGCAAGGGTTGAGTATTTTGCCCATG
AACAAAGGGGCAGCAGCTGCGATATGTGGTGTGGCATCGGGATCAGATAATTTTTCATCA
TATGTTAATTCACCAGCCACCCCACCACATGACCCCAGTAAGCCGATGACATCAGCATCT
ACTTTAAGTGAAGCTAACATTGCAAAATATTGACATCTGCTTTGTACAAGTTATTATTGA
AAATTTCGCAATTTAACAGTCTCTTCAGGGTGCGTCATTTTACCCACGTGTCCTCTATAA
CTGCCATCACCCACCGCAAGTACAATAGTTCATATGTCCAGTTGATTATACCTTACCAGT
ATTGTTATAGCTTTATAGAGTTTAAAAGCGACACTTGGTGTCATGTTTATATATGTTACA
TTAAAACCGAGCAAGTGGC
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[168-242] 3.94E-22 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[182-242] 19.629 |
| SMART |
Homeobox_dom (IPR001356) - T[184-246] 2.1E-21 |
| CDD |
Homeobox_dom (IPR001356) - T[185-243] 4.48985E-20 |
| Pfam |
Homeobox_dom (IPR001356) - T[185-241] 1.1E-19 |
| PRINTS |
Homeobox_metazoa (IPR020479) - T[206-217] 2.6E-5 - T[221-231] 2.6E-5 - T[231-240] 2.6E-5 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[217-240] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NKX62_HUMAN | 55.224 % | 202 | 6.13E-62 |
| NKX61_HUMAN | 50 % | 202 | 9.67E-61 |
| NKX63_HUMAN | 45.604 % | 138 | 9.84E-38 |