Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C5.431.v4.A.SL3-1

Possible name(s)

RANBP2; RANBP3; RANBP3L

Gene model

KH2012:KH.C5.431

Location

KhC5 [109,379 / 114,961]

Sequences

Amino acid sequence

Length: 458

>KH.C5.431.v4.A.SL3-1
TTLIAKFVLVRILKRNISRNLYKMSKSEDNKPQENIVSGTWLKRSRADMVGSSTEATEHE
PEEKRPAFRLQPPTLIHGQAKPVPKSAEDSTNRCKFLQPSKLTVSSTSGAQHKNDKSPLQ
PARIGSGLLVSSSNPFLLTANDSIKEEESVKENETVAPPEQTESKQNGGSADTGEKCVPD
STTDKATTKDTKEGNLFLQSTEVSASASDGFVFGKKMEERVTVAAINSDVAEQESGDAGS
SVSSSEFVFGQNLAERAKVSSSTDPPSLFMPPSNNEPSGLDAKNDSTNQVETKRGGLEED
AAAHFAASQHRTVIPEVEVVTGEEGEKNVLQMQCKLYQFDAKNQNWLERGVGSLHLNDGI
CNDGDVNFQSRLVMRTHGSLRLVLNTKVWPQMTVERASKKSVRVSAQTEDGSISVFLISV
SIYQFSSLTIILCINVERNNKRDAETIGLLILQGSYKE

Nucleotide sequence

Length: 1,563

>KH2012:KH.C5.431.v4.A.SL3-1
AAATAAGTCATAAAACTTTTGAACCACCTTGATTGCTAAGTTCGTTTTAGTAAGGATACT
AAAGCGAAATATTTCTCGAAATTTGTACAAGATGTCCAAGAGTGAAGATAATAAACCGCA
AGAGAATATTGTCAGTGGAACATGGTTAAAAAGATCACGTGCAGACATGGTGGGCTCATC
AACAGAAGCCACAGAACATGAACCAGAGGAGAAGCGACCAGCGTTTCGTCTGCAACCACC
AACATTAATACATGGACAAGCAAAACCTGTTCCGAAATCTGCAGAAGACTCTACAAACCG
ATGTAAATTTTTGCAACCTTCCAAATTAACTGTGTCGTCCACATCAGGAGCACAACATAA
AAATGACAAGTCTCCCCTTCAACCTGCCAGAATTGGATCTGGACTTCTTGTCTCTTCCAG
CAATCCGTTTTTGCTCACTGCCAATGATTCAATTAAAGAAGAGGAATCTGTTAAAGAAAA
TGAAACCGTCGCCCCTCCTGAACAAACAGAATCAAAACAAAATGGTGGCTCAGCAGATAC
TGGTGAAAAATGTGTTCCCGACAGTACCACAGATAAAGCAACAACTAAGGACACTAAAGA
AGGAAATTTGTTTCTACAAAGCACTGAAGTGTCGGCTTCCGCATCAGATGGATTTGTATT
TGGTAAGAAGATGGAGGAACGTGTTACAGTGGCCGCGATAAACTCGGATGTTGCTGAACA
AGAGAGTGGCGATGCTGGTTCTTCTGTTTCATCATCAGAGTTTGTCTTTGGTCAGAATCT
TGCTGAGCGTGCAAAGGTATCATCAAGTACGGATCCACCATCATTGTTCATGCCACCTAG
CAATAACGAACCATCTGGTTTGGATGCAAAGAATGATTCAACCAATCAAGTGGAAACAAA
GAGAGGAGGATTAGAAGAAGATGCTGCAGCTCATTTTGCCGCTTCTCAACATCGAACAGT
TATACCCGAAGTTGAAGTTGTTACTGGTGAAGAGGGAGAGAAAAATGTTCTTCAGATGCA
GTGCAAATTGTATCAATTTGATGCAAAAAATCAAAACTGGTTGGAACGAGGTGTTGGAAG
TTTACATTTAAATGATGGGATATGTAATGATGGTGATGTCAACTTTCAATCAAGACTTGT
TATGCGAACACATGGGAGTCTGCGTCTTGTTTTAAACACTAAGGTGTGGCCACAAATGAC
AGTGGAGCGAGCAAGCAAAAAATCTGTACGTGTTTCTGCTCAAACAGAAGATGGTAGTAT
TAGTGTTTTTCTAATATCTGTAAGTATATATCAATTTTCCTCACTTACCATTATTTTGTG
TATAAATGTGGAAAGGAATAACAAAAGAGATGCTGAAACTATTGGACTGCTAATTCTACA
AGGTTCTTATAAAGAATAGACATACTTTACCATAACCTATGACTTAACATGTTGCAAATA
TATAGGAAGCAGGTTTTGTATGTAAGTTCTAAGTTTTGTCTCGAAAAGTTTAGAACTTCT
GTGTTACATCTTAACACGATAATTTTTATACAAATGCATTAATATAATGTACCAGATATG
GTG

InterProScan

Gene3D	PH-like_dom_sf (IPR011993) - T[239-422] 7.7E-35
SMART	Ran_bind_dom (IPR000156) - T[310-428] 7.6E-9
ProSiteProfiles	Ran_bind_dom (IPR000156) - T[314-395] 17.116
Pfam	Ran_bind_dom (IPR000156) - T[318-398] 2.9E-15
ProSiteProfiles	PdxT/SNO (IPR002161) - T[446-458] 9.045

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RANB3_HUMAN	33.257 %	175	9.73E-49
RNB3L_HUMAN	35.581 %	136	1.79E-35