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TRANSCRIPT CARD

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  1. Molecular Tool 'cicl15d22-MO (Hamada's MO)'
  2. Transcript 'Phfumi.CG.MTP2014.S2...'
  3. Transcript 'KH2012:KH.C2.201.v1....'
  4. Transcript 'KH2012:KH.C5.416.v1....'

Transcript Model

Transcript Id

KH2012:KH.C5.416.v1.A.nonSL1-1

Possible name(s)

ATOH1; NEUROD6; PTF1A

Location

KhC5 [2,027,366 / 2,028,664]

Sequences

Amino acid sequence

Length: 192

>KH.C5.416.v1.A.nonSL1-1
TYFQINQHTMTSLQYEQVSRTFSTNKVNSRKRRSDDVTIGVAKKRRSNSAGKERDRLHVF
NQALETLQSVIPVRLTEQRNLHKKQTLQLAIRYINFLRGCLDGTRDWKERNRFWCRTQDE
MVIDAIDQAAAGHNVHCDVTSPQMTSPESESPPPPSGCYTQINYETVQPSIDESQSGLFT
SVTSLERRKPVL

Nucleotide sequence

Length: 1,150

>KH2012:KH.C5.416.v1.A.nonSL1-1
ACTTACTTTCAAATCAATCAACACACGATGACGTCATTACAGTACGAACAAGTTTCTCGA
ACCTTCTCAACCAACAAGGTGAACTCACGAAAACGCCGATCTGATGACGTCACAATAGGC
GTCGCAAAGAAACGTCGTTCAAATTCTGCTGGAAAAGAACGCGATCGACTTCATGTATTT
AACCAAGCACTAGAGACGCTACAGAGCGTAATACCTGTTCGTTTAACAGAGCAAAGAAAC
CTTCACAAGAAACAAACACTTCAGTTGGCGATCCGTTACATCAATTTCCTCCGTGGCTGT
TTGGATGGTACACGAGATTGGAAGGAAAGAAACAGATTTTGGTGTCGAACTCAGGATGAG
ATGGTCATCGACGCTATCGATCAAGCCGCTGCTGGACATAACGTTCATTGTGATGTGACG
TCACCACAGATGACGTCACCAGAAAGTGAGTCACCTCCACCACCATCAGGATGTTATACA
CAGATCAACTACGAAACAGTTCAGCCTTCCATTGATGAATCACAATCAGGATTGTTCACC
TCAGTTACGTCACTGGAACGAAGAAAGCCAGTATTGTGACGTCACATATTCTTTGGAAAC
AACTTCAATTCAAAATCCACAAAACTATGACCAACTCTATTCTCAATACGACCCAACTAC
GTCATTCCTGACGTCATACTTCCAAAACAACAGTATTCGTCAAGATGACGTCACCTATCT
AAACAAAGAAAGCGATGAATTATTCACATCTTTAACCGATGACGTCAGCACTTCTATTGA
TGACATCACTCCTACGTTTCCATATTCCAATATGCCAATGAATAATGTGTTCAACGAATT
TATTACGTCACCAGAAAATTTGTTACGTCATCCAGATAGTCCAGACAGTGGTTATTATAG
TCTGGTTTAATTTTGTTTTTTTTTAATATTCTAAACCATATTATGTTTAAAATTTTCTGC
ATAATAAAAAAAACATACCGGACAAACAGTTTTGAGTTTTGAAATTGTCCAAATCAGTCT
CGATCCAGGATTTAACGGGAATTCCCCGACTGTGACGTGTTTTAGACTAGAGTGACGTCA
CGTTGCGAAGTGACGTCAATATTGGTTTAAGCTTTGTATAAACAACAGAGCAAACCTGAA
AGAAAAAAAA

InterProScan

PANTHER
Twist-related (IPR015789) - T[7-175] 2.2E-69
Gene3D
HLH_DNA-bd_sf (IPR036638) - T[41-111] 1.3E-13
CDD
bHLH_dom (IPR011598) - T[43-98] 5.19515E-6
SUPERFAMILY
HLH_DNA-bd_sf (IPR036638) - T[43-115] 1.05E-11
ProSiteProfiles
bHLH_dom (IPR011598) - T[44-97] 11.668
Pfam
bHLH_dom (IPR011598) - T[45-97] 3.3E-8
SMART
bHLH_dom (IPR011598) - T[50-103] 0.0016

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value