- Molecular Tool 'cicl02b15-MO (Hamada's MO)' >
- Molecular Tool 'pGsx>OC::WRPW (Vassalli 2021)' >
- Transcript 'KH2012:KH.C3.316.v1....' >
- Transcript 'KH2012:KH.L13.3.v1.A...' >
- Transcript 'KH2012:KH.C5.277.v2....'
Transcript Model
Transcript Id
KH2012:KH.C5.277.v2.A.SL3-1
Possible name(s)
NVL; SPATA5; VCP
Gene model
Location
KhC5 [2,579,141 / 2,587,019]
Amino acid sequence
Length: 764
>KH.C5.277.v2.A.SL3-1
AKMEELQLFRADTVLLKGKKRKETVCVALSDDTISNEKIRINRVVRNNLRVRIGDVVSIH
SCPDVKYGVKIHVLPIDDSIEGISGNLFEVYLKPYFLEAYRPVHKGDVLLIRGGMRAVEF
KVVETDPSPFCVVSTDTTIHYEGEAIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELP
LRHPQLFKAIGIKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESE
SNLRRAFEEAEKNAPAIIFIDELDAIAPKRDKTHGEVERRIVSQLLTLMDGLKQRAHVVV
MAATNRPNSIDAALRRFGRFDREVDIGIPDATGRLEILRIHTKNMKLGADVDLEQVAAES
HGHVGADLAALCSEAALQQIRGKMDLIDLEDENIDAEVMNNLAVTMDDFRFAMSHSNPSA
LRETVVEVPNITWDDIGGLDSVKTELQELVQYPVEHPEKFLKFGMTPSKGVLFYGPPGCG
KTLLAKAIANECQANFISIKGPEMLTMWFGESEANVREVFDKARQAAPCVLFFDELDSIA
KSRGGNVGDGGGAGDRVINQILTEMDGMSSKKNVFIIGATNRPDIIDSAILRPGRLDQLI
YIPLPDEKSRIQILRANLRKSPVSKDVDLNLMAKVTKGFSGADLTEICQRACKLAIRESI
EKDIQRERERTRNGESNMDFDEDEEDLVPEIRRDHFEEAMRYARRSVTDKDIRKYEMFAQ
TLQQARGFGNFSFGRQAGPNAPSGGPAATGAGDLYEEEEDDLYS
Nucleotide sequence
Length: 2,733
>KH2012:KH.C5.277.v2.A.SL3-1
GCAAAAATGGAGGAACTACAGTTGTTTCGAGCCGACACTGTGTTGCTGAAGGGCAAAAAG
CGAAAAGAAACCGTTTGCGTTGCTCTGTCCGATGATACAATTTCGAACGAGAAAATCCGA
ATTAACCGAGTGGTTCGAAATAACCTGAGAGTTCGAATTGGAGATGTTGTAAGCATCCAT
TCGTGTCCGGATGTTAAGTACGGAGTGAAGATCCATGTCCTCCCCATTGATGACAGCATA
GAAGGAATCTCTGGAAACTTGTTTGAGGTTTACCTTAAACCTTACTTCCTGGAAGCTTAC
AGACCGGTGCACAAAGGAGATGTTCTTCTTATAAGAGGTGGTATGAGAGCTGTGGAGTTC
AAAGTAGTGGAAACAGATCCAAGTCCTTTCTGTGTGGTATCAACCGACACTACTATTCAC
TATGAGGGAGAAGCTATCAAGAGAGAGGATGAGGAGGAATCTTTAAATGAGGTTGGTTAT
GATGACATTGGTGGATGCAGGAAACAACTTGCACAGATCAAGGAGATGGTGGAACTTCCT
CTTCGTCATCCACAACTGTTTAAAGCTATTGGTATCAAACCACCAAGGGGTATTCTGTTG
TATGGTCCACCAGGCACAGGAAAAACTCTGATCGCTCGTGCTGTTGCAAATGAAACTGGT
GCTTTCTTCTTTCTTATCAATGGTCCGGAGATCATGAGTAAGTTGGCTGGTGAGTCGGAG
TCCAACCTCCGAAGAGCATTTGAAGAGGCGGAGAAGAACGCTCCTGCTATTATCTTCATT
GATGAACTGGATGCTATTGCTCCCAAACGAGACAAAACTCATGGCGAAGTGGAACGTCGA
ATTGTTTCTCAACTTCTAACTTTGATGGATGGTTTGAAACAGCGCGCTCATGTGGTCGTT
ATGGCTGCAACCAATCGCCCGAACTCCATCGATGCGGCTCTTCGTCGTTTCGGAAGATTT
GATCGGGAAGTGGACATCGGGATTCCGGATGCAACTGGAAGACTTGAGATCCTCCGCATC
CATACTAAGAACATGAAACTCGGAGCTGATGTAGATCTTGAACAGGTTGCTGCGGAATCT
CATGGTCACGTAGGAGCTGATCTCGCTGCTCTTTGTTCGGAGGCTGCCCTCCAGCAGATC
CGTGGAAAGATGGACCTCATTGATCTTGAGGATGAGAATATTGATGCGGAAGTGATGAAC
AACCTCGCTGTTACCATGGATGACTTTAGGTTTGCGATGTCGCATAGCAATCCATCAGCA
CTCCGTGAAACAGTGGTTGAGGTGCCCAACATTACATGGGATGACATTGGTGGTCTTGAT
AGTGTAAAAACTGAACTTCAAGAACTTGTTCAGTACCCTGTTGAGCATCCAGAGAAGTTC
CTTAAGTTTGGTATGACACCATCCAAGGGTGTGTTGTTCTATGGGCCACCAGGTTGTGGT
AAAACCCTCCTTGCCAAAGCTATTGCCAACGAGTGTCAAGCTAATTTCATCTCCATCAAG
GGTCCCGAGATGTTGACCATGTGGTTTGGTGAATCAGAGGCTAATGTCCGAGAAGTTTTT
GATAAGGCGAGACAAGCTGCTCCTTGTGTCTTATTCTTTGACGAGTTGGACTCGATCGCG
AAATCCCGAGGAGGAAATGTTGGAGACGGAGGAGGAGCAGGAGATCGGGTCATCAACCAG
ATCCTCACTGAGATGGATGGGATGTCAAGCAAGAAGAATGTGTTTATTATTGGAGCAACC
AATCGACCCGACATCATTGATTCTGCCATCCTCCGACCTGGTCGTCTTGATCAACTCATC
TACATCCCACTCCCAGATGAGAAGTCTCGCATTCAGATCCTTAGAGCTAATCTCAGAAAA
TCTCCTGTTTCCAAGGATGTTGACCTTAATCTGATGGCGAAAGTCACAAAAGGCTTCAGT
GGAGCTGATCTCACTGAGATCTGCCAACGTGCATGTAAGTTGGCCATCCGTGAAAGCATT
GAGAAAGACATTCAACGTGAGAGGGAACGTACAAGAAACGGAGAAAGCAATATGGACTTT
GATGAGGATGAAGAAGATTTGGTTCCAGAGATCCGACGTGATCATTTTGAGGAAGCGATG
CGTTATGCTCGACGATCAGTGACCGACAAGGACATCAGGAAGTACGAGATGTTTGCACAA
ACATTACAACAAGCACGTGGTTTCGGAAACTTCAGTTTTGGTCGTCAAGCTGGACCAAAT
GCTCCATCCGGTGGCCCAGCTGCTACAGGAGCAGGGGACCTCTATGAGGAGGAAGAAGAT
GACCTTTACAGCTGAATAACTCGAGCAGATATCATGGACCATACTTTAAATTCCGCTGCT
TAAAGTACACTTTTAATTTTCAATATGTAGTTCCTATTCAGACTGCTTTTCATTTTGGGC
TGCTTAGCCAAGTAATTGCGGGGTTTATTCAAAAAAACTAAAGAAAATCCGGTTGTGATC
CATTTTTCTAACATTTTCACTCTGTGTAGTAAATGTGTATAAACAAGAATTGGCAAAAAC
GTGACGCTATTATTTCAAGTGTACTGAGTAACAAAATGCTTATTTATTTCAAAATCTGGT
TCCATATTTCATATGCGAGAGCGATTCCTCAAAATTCAAATTTTGGAAAACTGTGTGTAA
ATAGTAGAACAAGATCTTCATGTACCAGGACCATAGGCAACCTGTGGAAAGGTTCACCAT
TTGTGTTGAATAAAATGTTATAAAAAGCTGTGA
| SMART |
CDC4_N-term_subdom (IPR003338) - T[1-65] 5.6E-8 |
| SUPERFAMILY |
Asp_de-COase-like_dom_sf (IPR009010) - T[2-62] 6.21E-18 |
| Pfam |
CDC4_N-term_subdom (IPR003338) - T[2-63] 3.7E-15 |
| TIGRFAM |
AAA_ATPase_CDC48 (IPR005938) - T[3-724] 3.2E-253 |
| SUPERFAMILY |
CDC48_domain_2-like_sf (IPR029067) - T[64-155] 5.56E-31 |
| SMART |
Cdc48_dom2 (IPR004201) - T[82-148] 2.3E-14 |
| Pfam |
Cdc48_dom2 (IPR004201) - T[83-145] 1.1E-11 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[157-419] 4.71E-64 - T[429-721] 6.32E-75 |
| SMART |
AAA+_ATPase (IPR003593) - T[194-330] 3.5E-23 - T[467-606] 1.4E-24 |
| Pfam |
ATPase_AAA_core (IPR003959) - T[198-327] 5.3E-46 - T[471-604] 2.3E-46 |
| ProSitePatterns |
ATPase_AAA_CS (IPR003960) - T[298-316] . - T[574-592] . |
| Pfam |
Vps4_C (IPR015415) - T[678-720] 5.0E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SPAT5_HUMAN | 48.043 % | 553 | 0 |
| TERA_HUMAN | 85.34 % | 1283 | 0 |
| NVL_HUMAN | 41.64 % | 470 | 1.92E-154 |