- Molecular Tool 'Ci-snail mRNA' >
- Transcript 'KH2012:KH.C5.277.v1....'
Transcript Model
Transcript Id
KH2012:KH.C5.277.v1.A.SL2-1
Possible name(s)
NVL; SPATA5; VCP
Gene model
Location
KhC5 [2,578,529 / 2,587,019]
Amino acid sequence
Length: 810
>KH.C5.277.v1.A.SL2-1
SKMAAKGGDKDDKDLATAILRTKSKPNRLIVEDAVVDDNSVVSLSPAKMEELQLFRADTV
LLKGKKRKETVCVALSDDTISNEKIRINRVVRNNLRVRIGDVVSIHSCPDVKYGVKIHVL
PIDDSIEGISGNLFEVYLKPYFLEAYRPVHKGDVLLIRGGMRAVEFKVVETDPSPFCVVS
TDTTIHYEGEAIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPQLFKAIGIKP
PRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRRAFEEAEKNA
PAIIFIDELDAIAPKRDKTHGEVERRIVSQLLTLMDGLKQRAHVVVMAATNRPNSIDAAL
RRFGRFDREVDIGIPDATGRLEILRIHTKNMKLGADVDLEQVAAESHGHVGADLAALCSE
AALQQIRGKMDLIDLEDENIDAEVMNNLAVTMDDFRFAMSHSNPSALRETVVEVPNITWD
DIGGLDSVKTELQELVQYPVEHPEKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA
NFISIKGPEMLTMWFGESEANVREVFDKARQAAPCVLFFDELDSIAKSRGGNVGDGGGAG
DRVINQILTEMDGMSSKKNVFIIGATNRPDIIDSAILRPGRLDQLIYIPLPDEKSRIQIL
RANLRKSPVSKDVDLNLMAKVTKGFSGADLTEICQRACKLAIRESIEKDIQRERERTRNG
ESNMDFDEDEEDLVPEIRRDHFEEAMRYARRSVTDKDIRKYEMFAQTLQQARGFGNFSFG
RQAGPNAPSGGPAATGAGDLYEEEEDDLYS
Nucleotide sequence
Length: 2,960
>KH2012:KH.C5.277.v1.A.SL2-1
GTATCATCCCTTTGTTTAAGCTTTATTTATTGAACTGATATAAGAAGCCACGGCATTTTT
GAATTTCTTGTTCACAGAATTTTCTTTGAAGCAAAATGGCAGCAAAAGGAGGAGACAAAG
ACGATAAAGATCTGGCAACTGCGATTCTCAGAACAAAGAGCAAACCGAATCGTTTGATTG
TGGAAGATGCTGTAGTTGATGATAACAGCGTGGTCTCCTTATCACCAGCAAAAATGGAGG
AACTACAGTTGTTTCGAGCCGACACTGTGTTGCTGAAGGGCAAAAAGCGAAAAGAAACCG
TTTGCGTTGCTCTGTCCGATGATACAATTTCGAACGAGAAAATCCGAATTAACCGAGTGG
TTCGAAATAACCTGAGAGTTCGAATTGGAGATGTTGTAAGCATCCATTCGTGTCCGGATG
TTAAGTACGGAGTGAAGATCCATGTCCTCCCCATTGATGACAGCATAGAAGGAATCTCTG
GAAACTTGTTTGAGGTTTACCTTAAACCTTACTTCCTGGAAGCTTACAGACCGGTGCACA
AAGGAGATGTTCTTCTTATAAGAGGTGGTATGAGAGCTGTGGAGTTCAAAGTAGTGGAAA
CAGATCCAAGTCCTTTCTGTGTGGTATCAACCGACACTACTATTCACTATGAGGGAGAAG
CTATCAAGAGAGAGGATGAGGAGGAATCTTTAAATGAGGTTGGTTATGATGACATTGGTG
GATGCAGGAAACAACTTGCACAGATCAAGGAGATGGTGGAACTTCCTCTTCGTCATCCAC
AACTGTTTAAAGCTATTGGTATCAAACCACCAAGGGGTATTCTGTTGTATGGTCCACCAG
GCACAGGAAAAACTCTGATCGCTCGTGCTGTTGCAAATGAAACTGGTGCTTTCTTCTTTC
TTATCAATGGTCCGGAGATCATGAGTAAGTTGGCTGGTGAGTCGGAGTCCAACCTCCGAA
GAGCATTTGAAGAGGCGGAGAAGAACGCTCCTGCTATTATCTTCATTGATGAACTGGATG
CTATTGCTCCCAAACGAGACAAAACTCATGGCGAAGTGGAACGTCGAATTGTTTCTCAAC
TTCTAACTTTGATGGATGGTTTGAAACAGCGCGCTCATGTGGTCGTTATGGCTGCAACCA
ATCGCCCGAACTCCATCGATGCGGCTCTTCGTCGTTTCGGAAGATTTGATCGGGAAGTGG
ACATCGGGATTCCGGATGCAACTGGAAGACTTGAGATCCTCCGCATCCATACTAAGAACA
TGAAACTCGGAGCTGATGTAGATCTTGAACAGGTTGCTGCGGAATCTCATGGTCACGTAG
GAGCTGATCTCGCTGCTCTTTGTTCGGAGGCTGCCCTCCAGCAGATCCGTGGAAAGATGG
ACCTCATTGATCTTGAGGATGAGAATATTGATGCGGAAGTGATGAACAACCTCGCTGTTA
CCATGGATGACTTTAGGTTTGCGATGTCGCATAGCAATCCATCAGCACTCCGTGAAACAG
TGGTTGAGGTGCCCAACATTACATGGGATGACATTGGTGGTCTTGATAGTGTAAAAACTG
AACTTCAAGAACTTGTTCAGTACCCTGTTGAGCATCCAGAGAAGTTCCTTAAGTTTGGTA
TGACACCATCCAAGGGTGTGTTGTTCTATGGGCCACCAGGTTGTGGTAAAACCCTCCTTG
CCAAAGCTATTGCCAACGAGTGTCAAGCTAATTTCATCTCCATCAAGGGTCCCGAGATGT
TGACCATGTGGTTTGGTGAATCAGAGGCTAATGTCCGAGAAGTTTTTGATAAGGCGAGAC
AAGCTGCTCCTTGTGTCTTATTCTTTGACGAGTTGGACTCGATCGCGAAATCCCGAGGAG
GAAATGTTGGAGACGGAGGAGGAGCAGGAGATCGGGTCATCAACCAGATCCTCACTGAGA
TGGATGGGATGTCAAGCAAGAAGAATGTGTTTATTATTGGAGCAACCAATCGACCCGACA
TCATTGATTCTGCCATCCTCCGACCTGGTCGTCTTGATCAACTCATCTACATCCCACTCC
CAGATGAGAAGTCTCGCATTCAGATCCTTAGAGCTAATCTCAGAAAATCTCCTGTTTCCA
AGGATGTTGACCTTAATCTGATGGCGAAAGTCACAAAAGGCTTCAGTGGAGCTGATCTCA
CTGAGATCTGCCAACGTGCATGTAAGTTGGCCATCCGTGAAAGCATTGAGAAAGACATTC
AACGTGAGAGGGAACGTACAAGAAACGGAGAAAGCAATATGGACTTTGATGAGGATGAAG
AAGATTTGGTTCCAGAGATCCGACGTGATCATTTTGAGGAAGCGATGCGTTATGCTCGAC
GATCAGTGACCGACAAGGACATCAGGAAGTACGAGATGTTTGCACAAACATTACAACAAG
CACGTGGTTTCGGAAACTTCAGTTTTGGTCGTCAAGCTGGACCAAATGCTCCATCCGGTG
GCCCAGCTGCTACAGGAGCAGGGGACCTCTATGAGGAGGAAGAAGATGACCTTTACAGCT
GAATAACTCGAGCAGATATCATGGACCATACTTTAAATTCCGCTGCTTAAAGTACACTTT
TAATTTTCAATATGTAGTTCCTATTCAGACTGCTTTTCATTTTGGGCTGCTTAGCCAAGT
AATTGCGGGGTTTATTCAAAAAAACTAAAGAAAATCCGGTTGTGATCCATTTTTCTAACA
TTTTCACTCTGTGTAGTAAATGTGTATAAACAAGAATTGGCAAAAACGTGACGCTATTAT
TTCAAGTGTACTGAGTAACAAAATGCTTATTTATTTCAAAATCTGGTTCCATATTTCATA
TGCGAGAGCGATTCCTCAAAATTCAAATTTTGGAAAACTGTGTGTAAATAGTAGAACAAG
ATCTTCATGTACCAGGACCATAGGCAACCTGTGGAAAGGTTCACCATTTGTGTTGAATAA
AATGTTATAAAAAGCTGTGA
| SUPERFAMILY |
Asp_de-COase-like_dom_sf (IPR009010) - T[25-108] 5.22E-26 |
| Pfam |
CDC4_N-term_subdom (IPR003338) - T[28-109] 8.9E-20 |
| SMART |
CDC4_N-term_subdom (IPR003338) - T[28-111] 5.2E-26 |
| TIGRFAM |
AAA_ATPase_CDC48 (IPR005938) - T[40-770] 5.9E-254 |
| SUPERFAMILY |
CDC48_domain_2-like_sf (IPR029067) - T[110-201] 6.21E-31 |
| SMART |
Cdc48_dom2 (IPR004201) - T[128-194] 2.3E-14 |
| Pfam |
Cdc48_dom2 (IPR004201) - T[129-191] 1.2E-11 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[203-465] 5.14E-64 - T[475-767] 7.29E-75 |
| SMART |
AAA+_ATPase (IPR003593) - T[240-376] 3.5E-23 - T[513-652] 1.4E-24 |
| Pfam |
ATPase_AAA_core (IPR003959) - T[244-373] 5.8E-46 - T[517-650] 2.6E-46 |
| ProSitePatterns |
ATPase_AAA_CS (IPR003960) - T[344-362] . - T[620-638] . |
| Pfam |
Vps4_C (IPR015415) - T[724-766] 5.4E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SPAT5_HUMAN | 48.043 % | 554 | 0 |
| TERA_HUMAN | 83.891 % | 1332 | 0 |
| NVL_HUMAN | 41.64 % | 471 | 4.24E-154 |