- Transcript 'KH2012:KH.C5.141.v3....'
Transcript Model
Transcript Id
KH2012:KH.C5.141.v3.A.SL1-1
Possible name(s)
PAPD4; ZCCHC11; ZCCHC6
Gene model
Location
KhC5 [3,882,336 / 3,901,891]
Amino acid sequence
Length: 1,469
>KH.C5.141.v3.A.SL1-1
TCYGKDAVKMQPSQVNSEHSSLNSGAPRGKLTQAAKFQTKSSSPSSTKQTTPKCSNGGKN
KSMETSGSGKKADSMNGKWHVPKPGVGSVTCNLEEHLEATSNGRVYDKPNVAHEEANRNG
KMNAAYDNVKMNQQNQNPVNGKNKMIQHNETTKTVNTVHKEADDAKPTELGISAKIKKKR
NKKKRDKLPATSPDPLIQAGNEILKLVNSGVNKNQNTPPTPSVDCSETPKIHQKKVVPST
PTISPGMEKLGLKQAEARLSRDYIFTLEKKSEDFPHAKFVCKLCNYHLDNVPLAHKHIKE
KRHQKALKERQQDNILRELSLPSPPAINNLQKVLLTEVVAEVMSESDVQLRTNTVQDLEQ
LISTHIPKSRVVLYGSSCSGFGFTSSDVNVDLQYPSTMRAPAALLKVLSLLQDSETYQDV
NADFLGKNPRINFTDQKSSLNISLSTGNESSILTSRLLRFYSLLDPRVIQLSMVFRKWAK
MCRLDLQSEGSLPSHAFIIMTIFFMQRHKYIPALHEIIADHDMTSILNHSSISKCELLDF
TSGSCHYTATLPPKQPSSPVKKPTPTEEDETDSDAETNTTLENCISESPDSNIELDSPLS
GAQEPVKPSPIQPNNPVNLMGGLEGKQLLVADLWLAMIKFFALEYPMEDQIICICTSRTL
LRSDKNWSRKRVAIVDPFSSKRNLCRSMTQQAVFGYMMSRLKAAVTYFYASRAQNDTPQV
SCGNHDVNDNTPSTSNGGTGLSQLYTFVYIYSIEEQLDEVVPKICDMAIHSVLDEVAEDT
TRYEFTNKVITGGHYPVKVCVLCKNEGHVRKDCPDEAKVMDLVELPPITKSLLNALDRVC
NYMYENFALRQKEVQERNKICEALMNYIQRKYNFKCQMNLFGSSRNGFGFRRSDLDICMT
FYGNATGEDLDFVSIITDVAKCLRRNSDLCNILPITTAKVPIVKFEHKMSGLEGDISLYN
LLAQKNTAMLSCYSSIDCRCKVLGYAMKVFVKRCQIGDASRGSLSSYAYTLMVIFYLQQR
KPPVLPVLQQLYEGSEQPVDTIDGWNAWFNSDVKALKDIWPEFGKNKESIGELWHNMLRF
YTEEFDFRHHVVCIRKHEPLTVFEKEWTSKFISIEDPFDLNHNLGAGVSRKMSNFIMRVF
VKARQHFANLPPKNMDPIHEPEYFFDANILMDGEEAPNDRCCRVCGKIGHFVRDCPRKKR
RRGQDNGQQEVKDMNEYRCFLCGEFGHIKKDCPEYNNDSNFTGQNKFFRGSSPRNSDFQQ
RNFQSPKYKMSPHQNNKRNNSHTPGSRDTRRSSPPPHPSHRSNETRAKMNLFPPPAQERS
IESSPRFVQSSPKQIPDKRRTPNKQWPSSPHTQQSPVYHQPPSASTQGYHGSPYNVIPYN
NGVYGGSPYNTGMPDHGKDPHRDQMGNGTQYLNNPAMVQGRNRNMAYSPMHPLLSPMMND
GQQMSPGSRTPMGSSPHKQQRHHNRRNQK
Nucleotide sequence
Length: 4,864
>KH2012:KH.C5.141.v3.A.SL1-1
GACTTAATACTGTGTAGTCTGCTAAATACTATTGTATGCATGTGGAAATTATAGTAGTAT
AATTTGCACTAAACATGCTACGGGAAGGACGCGGTAAAAATGCAACCATCACAAGTCAAC
AGTGAACACAGTTCTCTAAATTCGGGTGCTCCTCGTGGGAAACTAACCCAAGCAGCAAAA
TTCCAAACCAAAAGTAGTTCACCATCTTCTACCAAGCAAACTACTCCGAAATGCTCAAAC
GGGGGAAAAAACAAATCAATGGAGACTTCTGGTAGTGGAAAGAAAGCGGATAGTATGAAT
GGTAAATGGCATGTCCCTAAACCTGGGGTTGGCAGTGTGACTTGTAACTTGGAAGAACAT
CTAGAAGCAACGAGTAATGGCAGGGTATATGATAAACCTAATGTGGCTCATGAAGAAGCT
AATAGAAATGGAAAGATGAATGCAGCATATGACAATGTTAAAATGAATCAACAAAATCAA
AATCCAGTAAATGGGAAAAACAAAATGATTCAGCATAATGAAACTACTAAGACAGTGAAC
ACAGTACACAAAGAAGCAGATGATGCTAAACCAACAGAACTGGGTATCAGTGCCAAAATC
AAGAAAAAAAGAAATAAGAAAAAGCGTGACAAGCTACCAGCTACAAGTCCAGACCCGCTA
ATTCAAGCAGGTAATGAGATTCTGAAACTAGTGAACAGTGGTGTAAATAAGAACCAAAAC
ACTCCACCAACTCCAAGTGTGGATTGCTCTGAAACACCAAAAATCCATCAGAAGAAAGTG
GTTCCATCTACACCCACCATTTCCCCTGGTATGGAAAAACTTGGTTTGAAACAAGCAGAA
GCTCGGCTTAGTAGAGATTATATATTTACACTGGAAAAGAAATCTGAAGACTTTCCCCAT
GCAAAGTTTGTATGTAAACTGTGCAACTATCACCTTGATAATGTACCTCTTGCACACAAG
CACATTAAGGAGAAAAGGCATCAGAAGGCACTGAAGGAAAGACAGCAGGACAACATATTA
CGTGAGCTCTCCCTTCCTTCCCCCCCTGCCATCAACAACCTACAGAAGGTCTTACTTACT
GAGGTAGTAGCTGAAGTAATGAGTGAAAGTGACGTACAACTACGCACTAACACAGTGCAA
GACCTTGAACAACTTATCAGCACTCATATACCAAAGTCACGTGTTGTGTTATATGGTTCA
TCATGCAGTGGGTTTGGTTTTACATCAAGTGATGTGAATGTTGATCTACAATACCCATCC
ACCATGCGTGCTCCTGCTGCCTTGCTTAAAGTTCTTTCACTTCTTCAAGATTCAGAGACT
TACCAAGATGTGAATGCGGATTTTCTCGGAAAGAATCCTCGGATTAATTTCACGGATCAA
AAATCATCACTTAACATCTCTTTAAGCACGGGGAACGAATCGAGCATCCTGACAAGTCGT
CTGCTACGTTTCTACTCCCTGCTTGACCCCAGAGTAATTCAGTTAAGCATGGTGTTTCGT
AAATGGGCAAAAATGTGTCGACTTGATCTACAAAGTGAGGGTTCCCTACCATCCCATGCA
TTCATCATTATGACCATCTTCTTCATGCAAAGGCACAAATATATACCAGCTCTACATGAG
ATAATTGCTGACCACGACATGACATCCATATTGAACCATTCTTCCATTTCTAAATGTGAG
TTGCTGGACTTTACAAGTGGTTCATGTCATTACACGGCAACTTTACCACCTAAACAACCA
AGCAGTCCTGTAAAGAAGCCGACCCCTACTGAAGAGGATGAAACTGACTCGGACGCTGAA
ACAAACACGACACTCGAGAATTGCATATCTGAATCTCCAGATAGCAATATTGAGCTTGAT
TCGCCACTATCAGGCGCTCAAGAGCCCGTCAAGCCGTCCCCCATACAACCCAACAACCCT
GTTAACCTTATGGGAGGGTTAGAGGGAAAACAATTGCTTGTTGCTGATTTGTGGTTGGCC
ATGATAAAGTTCTTTGCATTGGAGTATCCTATGGAAGACCAGATCATATGCATCTGCACA
AGTCGAACCCTGCTTAGATCAGATAAGAATTGGAGCAGAAAAAGGGTTGCAATTGTTGAT
CCTTTCTCTTCCAAGAGAAATCTATGTCGTTCTATGACTCAACAGGCAGTGTTTGGGTAC
ATGATGTCCCGGTTAAAAGCAGCCGTGACTTACTTCTATGCTTCACGTGCACAAAATGAT
ACACCGCAAGTATCATGTGGCAATCATGATGTGAATGATAACACTCCATCTACTAGTAAT
GGTGGTACAGGTTTGTCTCAGTTGTATACGTTTGTTTATATATATAGTATAGAGGAACAA
CTGGATGAAGTTGTTCCAAAAATTTGTGACATGGCAATCCACTCTGTGCTTGACGAAGTT
GCTGAGGATACTACAAGGTATGAGTTTACTAATAAAGTGATAACTGGTGGACACTACCCC
GTCAAAGTTTGTGTCCTGTGCAAGAATGAGGGGCATGTTCGCAAGGATTGTCCCGATGAA
GCTAAAGTTATGGACCTTGTGGAACTACCACCTATAACCAAGTCTCTACTAAATGCACTG
GATCGTGTATGCAACTATATGTATGAAAACTTCGCATTGAGGCAGAAGGAAGTCCAGGAA
AGAAACAAAATATGTGAAGCACTTATGAATTACATACAACGCAAATACAACTTCAAATGT
CAGATGAATTTATTCGGTTCTTCAAGAAATGGTTTTGGTTTTCGTCGTAGTGACCTTGAT
ATTTGTATGACTTTCTATGGGAATGCTACAGGAGAGGATTTAGACTTCGTGTCCATCATC
ACTGATGTTGCGAAGTGTCTTCGTAGGAATTCCGATCTTTGCAACATCCTCCCAATCACC
ACAGCTAAAGTCCCGATCGTAAAGTTCGAGCACAAGATGAGTGGCTTGGAGGGAGACATA
AGTTTATACAACTTACTGGCACAAAAGAACACAGCTATGTTATCCTGTTATTCTTCCATT
GATTGTCGATGCAAGGTGCTCGGGTATGCCATGAAAGTTTTCGTGAAGCGGTGTCAGATT
GGTGATGCTTCACGAGGCTCATTATCATCATATGCATACACACTCATGGTCATATTCTAT
CTGCAACAGAGGAAACCTCCAGTGCTGCCAGTTTTACAACAGTTATACGAAGGTAGTGAA
CAACCTGTAGATACAATAGATGGTTGGAATGCCTGGTTCAACAGTGATGTCAAAGCTTTG
AAAGATATCTGGCCCGAGTTTGGCAAGAACAAGGAATCCATCGGCGAGCTGTGGCACAAT
ATGCTTCGCTTCTATACAGAGGAGTTTGACTTCAGACACCATGTTGTGTGTATAAGAAAG
CATGAACCATTGACTGTGTTTGAAAAGGAATGGACTTCCAAGTTTATTTCAATTGAAGAT
CCGTTTGATTTGAACCATAACCTTGGTGCTGGTGTATCGCGCAAGATGAGCAACTTTATC
ATGCGTGTGTTTGTGAAAGCAAGGCAACACTTTGCCAACTTACCACCGAAAAATATGGAT
CCTATTCATGAACCTGAATATTTCTTCGATGCCAACATCCTCATGGATGGAGAGGAAGCT
CCCAATGACCGATGTTGCAGAGTTTGTGGGAAGATCGGACACTTTGTACGAGACTGTCCC
AGGAAGAAAAGAAGAAGAGGACAAGATAATGGGCAACAAGAAGTAAAGGATATGAATGAA
TACAGATGTTTCTTATGTGGAGAATTTGGACATATTAAGAAAGATTGCCCAGAGTATAAC
AATGATAGTAACTTCACAGGACAAAACAAATTTTTCCGTGGTTCTTCACCAAGAAACTCT
GACTTTCAACAAAGGAACTTTCAATCTCCCAAATACAAGATGTCTCCTCACCAGAATAAT
AAGAGGAACAATTCCCATACACCTGGTAGCAGAGACACAAGAAGAAGTAGCCCCCCACCC
CACCCCAGCCATCGATCAAATGAAACTCGTGCAAAGATGAATCTATTTCCACCTCCTGCT
CAGGAAAGATCGATCGAGAGCAGTCCACGTTTCGTGCAATCATCACCAAAGCAAATTCCT
GATAAGAGGCGGACACCAAACAAACAGTGGCCTTCCTCCCCCCACACCCAGCAATCTCCT
GTATACCACCAACCACCATCTGCATCTACACAAGGTTACCATGGATCTCCATACAATGTG
ATTCCTTATAATAATGGAGTGTATGGTGGATCGCCATACAATACTGGGATGCCTGATCAT
GGTAAAGATCCTCACCGTGACCAGATGGGCAATGGAACACAATATCTCAACAACCCGGCA
ATGGTGCAGGGCAGAAACCGTAACATGGCATACAGTCCTATGCACCCTCTACTATCGCCG
ATGATGAACGACGGTCAGCAGATGTCGCCCGGCAGCCGTACCCCAATGGGGAGCTCTCCC
CACAAGCAGCAAAGGCACCATAACCGTCGCAACCAGAAATAAGACCCACGACAAGCGTCC
TTTATCGTCTCGTAAAGTTTTATCCCCGCTTACATTAGTGTTGTTTGGTGATTATTTTTT
CATCACTTTTTAGGATGCAATTTAGCGCGCAACATTTTCTTCGAACACCTTTGGTTTTAT
GTTTTCTTGTGGTTCTAGCTATCGTCTGCCACTTGTTTTGCTTCCAAGACGTTTTATTCT
TTTAAACTTTTAGCGCCGCACCCTGAGACGGGTAAGCTTGAAATCTGAAAACAGATTTCT
GTATTTTGTTTTAAAATAAATTGATTTAGACCAATGTGGTTGCTGTTTATCAGCTGCAAT
AGGTTTCCATCCGGTTTTGTAAGCCAATATGATTTTTTTGCAATATAAAACTGTGGTTGG
CAAA
| Pfam |
PAP_assoc (IPR002058) - T[630-680] 7.8E-5 - T[1069-1122] 6.8E-14 |
| SMART |
Znf_CCHC (IPR001878) - T[799-815] 0.027 - T[1181-1197] 0.0061 - T[1218-1234] 4.4E-5 |
| ProSiteProfiles |
Znf_CCHC (IPR001878) - T[800-815] 8.812 - T[1182-1197] 9.851 - T[1218-1234] 10.576 |
| SUPERFAMILY |
Znf_CCHC_sf (IPR036875) - T[1174-1236] 7.61E-9 |
| Pfam |
Znf_CCHC (IPR001878) - T[1181-1196] 0.0011 - T[1219-1234] 9.5E-5 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TUT4_HUMAN | 45 % | 528 | 9.12E-161 |
| TUT7_HUMAN | 57.212 % | 500 | 9.08E-152 |
| GLD2_HUMAN | 30 % | 141 | 3.0E-35 |
