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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.C5.109.v3....' > 
  2. Molecular Tool 'Mitf>Twist' > 
  3. Molecular Tool 'TCF∆C' > 
  4. Transcript 'KH2012:KH.C5.109.v2....' > 
  5. Transcript 'KH2012:KH.C5.109.v1....'

Transcript Model

Transcript Id

KH2012:KH.C5.109.v1.A.SL2-1

Possible name(s)

AC113404.3; RAP1A; RAP1B

Gene model

KH2012:KH.C5.109

Location

KhC5 [2,174,033 / 2,184,578]

Sequences

Amino acid sequence

Length: 194

>KH.C5.109.v1.A.SL2-1
FIFSDPGDKGLVMREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEAEN
QQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITSQASFNDLTDLREQILRVKDTDE
VPMILVGNKCDLEDERIVTREQGELLSRQWHCSFMETSARTKINVENAFFELVKQINSKQ
PPPVTKESCCCNIL

Nucleotide sequence

Length: 1,824

>KH2012:KH.C5.109.v1.A.SL2-1
ACCATTATAATTACAGAGCTTGTAGTTTTGTGTATACTGTTGGACTGTTGTAAGTAGCTG
TTGTATGTTAAGCGCCATAATTACACAAGAAAGAAAAGAGATTAATTTAAGGTTAGTAAG
GTTAATTGAATGTTGAAACATTTGTATAATTTGGTACAAACCCCATTATTGATGTGGATG
CCAATACGTTTAAGCTGTGCTGTGTGTAATGGGTTTTGTAATTAATTATTAGATATGGCT
GTGCCGGTACAAGAGTATGATTTACTGTCACAGGATTCTGGGTGTTTTTTTTCTTCAGTT
TTTAAACAAAGCATTTTTCATGTCTGTTTGATTTAAGCTGTTGGTGTAGTGGTTAAGAGG
AACTTTTTATTTTTAAGGAACTGATACTTGTGGAGTTGTGGTTAGTAGGCCCACTGTCTT
CCTTTGTTGGTTCATAACAGCAATACTTGTGAATAAACCCTTTACCATTCAGTCTGCGCA
ATATGACAATTCTTTATAAGATCTCAGCAAGCAAAATAGGAAATAACACTTTTTACATAT
CTATTTTAAAACAGATTTGGTTCATTGACATTGTTTAAAAAATAACATGTACGACCAAGG
CGTGCAAAACTAAAAGTTTGTAAAAAAAATTGCGCTACACCGATCATACTCAGCAGACGG
TTTAACAATTCTCTATTGAAAACCCTTTTCAAAAAGTTTATGTATATATATGTGTATATA
TAAATTTTTAAATATTGATTTATCTTTTCAGATCCCGGTGACAAAGGTCTAGTAATGAGG
GAATACAAGCTTGTTGTGCTTGGCTCTGGGGGTGTGGGGAAAAGTGCACTGACAGTTCAA
TTTGTCCAAGGAATCTTTGTGGAGAAATACGACCCCACCATTGAGGACAGCTATAGAAAA
CAAGTTGAGGCAGAAAACCAGCAATGTATGCTTGAAATTCTTGATACTGCTGGAACGGAA
CAATTCACGGCAATGCGAGATCTGTACATGAAGAATGGGCAAGGGTTTGTGCTTGTGTAC
AGCATCACATCTCAAGCCTCGTTTAATGATCTCACTGACTTAAGGGAGCAGATATTAAGA
GTAAAAGATACTGATGAGGTTCCCATGATATTAGTTGGAAACAAATGCGATTTGGAAGAC
GAGAGGATTGTAACAAGAGAGCAAGGGGAACTGTTATCTAGGCAGTGGCATTGCTCCTTC
ATGGAGACTTCAGCCAGGACCAAAATCAATGTTGAAAATGCATTCTTCGAATTAGTCAAA
CAAATCAATTCAAAACAACCACCCCCTGTAACCAAAGAAAGCTGTTGTTGCAATATTCTA
TAGAAATCTTTAGCATTATTCCCTGTGACGTCATAATGGAGTAGTATGACGCAAGAATCC
CCCAACTCTGCTTGTATAAAGAGCCCTCCTACAACGACCACAAAGGGTTATATTTTCGCC
TCTTTATTTCCTATACGAGCAAGTACGCATTTCCCTTTGCTGTTTTATTGCATATAACGT
CGTTTAACCTTGCTGTTATCCAACCTAAGTAACTCTTTTTTTTCATCACTTTAAATTAAC
TCCTTCGCCTAGAAAATAGTTTTAGAAAATCTCATATTTTCATTTGTAACCTTGAACCTA
GTCGAATAACACAGCGTAAGTTCTATTGCATTCTAATAGTGTTGCATTTTAACGCGTAGC
GGTGCCACAACTGCTGCATTCTTCGCCTTAGATTTGGTTTCAAATTAGACGGTAGAATCT
TTTAACCCACTCCTAAAATATGCTTTTAATTCCGAGTTGAATGTAACGATTTGTACATAA
ATAAATAAAGTACCGGCCTTATAA

InterProScan

ProSiteProfiles
Small_GTPase_Ras (IPR020849) - T[11-194] 44.264
TIGRFAM
Small_GTP-bd_dom (IPR005225) - T[13-169] 7.9E-33
PANTHER
Small_GTPase_Ras (IPR020849) - T[13-185] 2.8E-97
SUPERFAMILY
P-loop_NTPase (IPR027417) - T[14-176] 2.44E-53
Pfam
Small_GTPase (IPR001806) - T[17-177] 1.1E-57

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
RAP1B_HUMAN 79.558 % 299 3.98E-105
RAP1A_HUMAN 81.765 % 291 5.34E-102
RP1BL_HUMAN 78.453 % 294 3.76E-103