- Molecular Tool 'Harore_Popk-1_MO1 (Nakamura 2005)' >
- Transcript 'KH2012:KH.C4.84.v1.R...'
Transcript Model
Transcript Id
KH2012:KH.C4.84.v1.R.nonSL2-1
Possible name(s)
CRX; OTX1; OTX2
Gene model
Location
KhC4 [4,308,889 / 4,321,449]
Amino acid sequence
Length: 453
>KH.C4.84.v1.R.nonSL2-1
KVKNQVEKRRHFERKNKFISSTTGSIPNMSYLKSPHYAMNGLGLGHDMNLLHPTVTYPGD
SAACYFQRIQGMHQGAKNMQFAAPPVYSSSRKQRRERTTFTRAQLDILEALFGKTRYPDI
FMREEVALKINLPESRVQVWFKNRRAKCRQQVQQQQQKQKSGSGGSSSNSSSSTGSSSSG
SASSTNSNNNSSSSSNKKKSPPTTPTPTANGPTTSSSPFQQHGAPSAHAPHAQSTSPPLP
SSPVSSNGQIAPSVTPSELMSANGPAPISLPGSHGAHSGMVHNGSSSNIWSPASVSPGAS
SDGASNVPGIGYTGALGSNNSPYMAAAAAVAHAAHSPYSATSNAQVSSTGYPQNYHTSHS
YFGTMEASYLPSVPFPGAAPGCGMGDMSMAGQQSAAQLGHHGTGQPHPASHHQFMSQSYP
YHHASSGVTPTYPTVSDCLDYKDQTQAWKFQVL
Nucleotide sequence
Length: 2,591
>KH2012:KH.C4.84.v1.R.nonSL2-1
CTTAATTGATCGCTTTTTATTTTAGTTGATGTGGAGAATTGGAAACGGAATTTCAGTTTG
GATATTAGGCTTCAACCTGATAATTTTGAAAAATAGAGGTTTATTAAATTTGTAAAATAA
GTTGATTGATTACAATCTACAAGCAAGAAGTTTGAAAAGTAAAAAATCAAGTTGAAAAAC
GAAGACATTTTGAACGAAAAAACAAATTCATTTCAAGTACCACGGGTTCAATTCCTAACA
TGTCGTATTTGAAATCTCCCCACTACGCTATGAATGGACTGGGCTTAGGCCACGATATGA
ATCTTCTTCACCCTACAGTCACCTATCCCGGCGACTCTGCAGCTTGTTACTTCCAACGAA
TCCAAGGAATGCACCAAGGAGCTAAGAACATGCAATTTGCGGCACCACCAGTATACAGTT
CGTCTAGAAAACAAAGGCGAGAGCGAACGACCTTCACACGAGCTCAACTCGATATTTTGG
AAGCTTTATTCGGAAAGACAAGATATCCCGATATCTTTATGAGAGAAGAAGTTGCCCTAA
AGATCAACCTTCCAGAGTCCCGAGTACAGGTGTGGTTCAAAAATCGACGAGCAAAGTGTC
GCCAACAAGTGCAACAACAACAGCAAAAACAAAAATCCGGGTCAGGTGGCAGTTCATCTA
ATTCAAGCAGTAGTACTGGTAGCAGCAGCAGCGGAAGCGCCAGCAGCACCAACAGCAACA
ATAATAGCTCATCAAGTTCAAATAAGAAGAAAAGCCCACCGACCACACCTACCCCAACGG
CGAACGGACCTACTACCAGCAGTTCACCCTTCCAGCAACACGGAGCACCTTCAGCACATG
CCCCACACGCGCAATCAACCAGTCCACCTTTGCCCAGCTCTCCAGTGTCATCTAACGGAC
AAATCGCACCATCTGTCACGCCATCAGAGCTTATGAGTGCCAACGGCCCAGCACCGATCA
GTTTACCTGGATCCCATGGCGCACACAGCGGTATGGTACATAACGGTAGTTCAAGCAACA
TTTGGAGCCCTGCTTCGGTCTCTCCTGGTGCAAGCAGCGACGGAGCATCAAACGTCCCAG
GTATCGGTTACACCGGTGCTTTGGGAAGTAATAACTCCCCATACATGGCTGCCGCAGCTG
CTGTAGCTCACGCTGCACATTCACCATACTCTGCGACATCCAATGCACAAGTTTCATCAA
CTGGCTACCCACAAAACTACCACACCTCGCACTCTTACTTCGGTACAATGGAAGCGTCCT
ATCTTCCATCTGTGCCTTTCCCGGGCGCTGCACCTGGATGCGGAATGGGAGATATGTCAA
TGGCAGGGCAGCAGTCCGCAGCTCAGCTTGGCCACCACGGTACTGGCCAACCCCACCCAG
CAAGCCACCATCAGTTTATGTCTCAGTCGTACCCCTACCACCATGCATCGTCAGGGGTAA
CGCCGACCTACCCTACTGTCTCGGACTGCTTAGACTACAAAGACCAAACCCAGGCGTGGA
AATTCCAAGTCTTGTAACGCCTATCACGCGAAATGTAGCACTAAACACAGCGAGCTGTAC
GAACGCCTGGCAGCCAAGGCCGATGCGAACAATGTAGACGAGGCACCGCTTTTGCTCGAC
GCTGTTAGGAGACATACTGGCGAACTGACTTGCCAACTATAGATACACAACTTACCAGCT
TGAAATGGAGTGCCAACTGTTCGCCGCTGGTCGGAACTGCATAAGTGCGCCTTGTAAATA
ACTTGAGAAAGCCGCTTAACCGAGTGATGTTTCTATAACCATTCGCTCGGCCAAGTTTAC
GAGTTTATCAGCAATTGTACGAAAAATTCAGTTTTCCTGACGTCATAAGATTGATGTTGT
AACTTGTGTTGTGTTTTTTTTTCTCACCGCTTGGTGTTGTATTGCTTTATTTAAATTCTT
TGTTTTTTTTCGCAGTTATATTTGCTATATAATAATACGCTGCACAAGGTCCTAAGTTAT
CATATTTTTCATAAAAACTTTTGGTTTGAAAACAGACATTTTCAGCACCATACACCCATA
CCAGCATAAGCTATAACATATTAAATAATAATTTCAACCCTGGTGCTGTAATGTCGGTTG
AAATCGTATGCTCAGCGTTTCCTTACCAACATAGGTTGTTTTTCACCCTACGATACAACA
ACAGCTTTTTATTTGTGCTGTTTTCAAATCATTTTTTTTCATTTTCGTGCCCGAATACAC
CGCGTAACTTTAGAGCATTTCAGTATTTCGCCGAAAAGACGACTGCTTGAACCATCTTAA
AGGAAATCTGTGCAATATAAACACCCACACATACCTTTCCAAACATTCCAGAATATTGGA
CTGTCCTCCATTTTGGATTAGGTTTCGTTTAAAAACTTAAATGCCCGCGTATGGTTTATA
ATGTTGCCAACTTATGGTTCAATGCTTTATCGTATAAGATTCCCCAAAAGCCATTGAGAT
TTTCGTTCGCGAAACCATATGTATTAATATCACACCGTTTATCATCTTATACACGGCAGT
GTTGTTAACTTTGTTTCTGTAACCGAATGTCCCTTTATTTGCTTTTGATCAATACAAGAA
ATGAAAAAGTG
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[81-151] 3.21E-23 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[91-151] 19.224 |
| SMART |
Homeobox_dom (IPR001356) - T[93-155] 1.2E-23 |
| Pfam |
Homeobox_dom (IPR001356) - T[94-150] 2.0E-21 |
| CDD |
Homeobox_dom (IPR001356) - T[94-151] 1.90522E-23 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[126-149] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| OTX2_HUMAN | 64.754 % | 155 | 7.43E-44 |
| OTX1_HUMAN | 61.429 % | 164 | 1.0E-46 |
| CRX_HUMAN | 53.279 % | 128 | 7.25E-34 |