Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C4.572.v1.R.ND1-1

Possible name(s)

AGTPBP1; ARMC6

Gene model

KH2012:KH.C4.572

Location

KhC4 [2,625,065 / 2,637,213]

Sequences

Amino acid sequence

Length: 468

>KH.C4.572.v1.R.ND1-1
RNMCEVKAITQATFDAVVQENIDDFDMEPNEALEDAINQFLSQGISLGMIIKEVGMNAEH
EVITLTKSLEKYKSTDLDSTEKDALKKTLLSLTEKFQSDLAKRYQASKIADAHVVLFELC
KLNADDLDLLNDCMQTLSALVNGQPDLVSKEATAFFLSIIKDSSNEEIALLVLKILKFSC
LKHEQNRVNFVKEDGIAIVLSTAEKFKDRPQVVKEACGVLRSLTLDDDVRVQFGKAHDHT
KLIVTEHKGMERLFDFMREHASDPAISSELCLTMSKLMVRSEFCQQLVDMGGLDVILGMI
DKHLERQNLVRHCITLIKSISGNDDVKVAVVKSGGAELLIQVLGKHNSNAQICESCLAAI
TTLSLRNPSHCDVIMAKNTAPLMVQAMKLHSEHAGVQKQACMAIRNLVARTRQHSTAFIE
NGADELIRKARLLHKEVLEDESKAALRDLEVHVELKERWKGENVGITY

Nucleotide sequence

Length: 1,646

>KH2012:KH.C4.572.v1.R.ND1-1
AAAGAAACATGTGTGAAGTGAAGGCGATAACACAAGCCACGTTCGATGCGGTTGTGCAGG
AAAATATCGACGATTTTGACATGGAACCAAATGAAGCTCTTGAAGATGCAATTAATCAAT
TCCTTTCACAGGGTATAAGCTTGGGCATGATCATTAAAGAAGTTGGAATGAATGCCGAGC
ATGAGGTTATAACTCTTACAAAATCACTTGAAAAATACAAATCGACAGATCTCGATTCCA
CAGAAAAAGATGCTTTAAAGAAAACCTTATTAAGTTTAACAGAGAAGTTTCAAAGTGATC
TTGCAAAAAGATACCAAGCTTCAAAAATTGCAGATGCTCATGTTGTTTTGTTTGAGCTCT
GTAAACTTAATGCAGATGATCTGGACCTTTTAAACGATTGCATGCAGACACTCAGTGCAT
TAGTTAACGGACAGCCTGACCTGGTTTCAAAAGAAGCAACTGCTTTTTTCCTGTCTATCA
TCAAAGACTCCAGCAATGAAGAAATAGCTCTACTAGTGCTAAAAATATTAAAGTTTTCAT
GTCTAAAACATGAACAAAATCGTGTCAATTTTGTAAAAGAAGATGGAATTGCAATTGTGT
TATCCACAGCTGAAAAATTTAAAGATCGCCCACAAGTGGTGAAAGAAGCGTGTGGTGTGC
TGCGTTCGCTCACTCTTGACGATGATGTCCGAGTACAGTTTGGTAAAGCCCACGACCACA
CAAAGCTTATTGTGACCGAACATAAAGGAATGGAAAGACTATTCGACTTTATGAGAGAGC
ACGCCTCTGACCCCGCCATCTCCAGCGAACTCTGCCTCACTATGAGTAAACTGATGGTAA
GAAGTGAATTTTGCCAACAGCTCGTAGACATGGGAGGACTGGATGTTATACTTGGTATGA
TAGACAAGCATCTTGAACGACAGAACCTAGTGAGGCATTGCATCACTCTCATTAAATCGA
TAAGCGGCAACGATGACGTAAAAGTAGCAGTGGTCAAGTCAGGTGGTGCTGAACTACTGA
TTCAAGTGCTTGGAAAACACAACTCCAATGCACAGATCTGCGAATCCTGTCTCGCAGCAA
TCACCACTTTATCATTACGTAACCCATCTCACTGTGACGTCATAATGGCGAAAAACACCG
CACCACTGATGGTGCAAGCGATGAAACTTCACAGCGAGCATGCAGGCGTCCAGAAACAAG
CTTGTATGGCCATCCGAAACTTAGTGGCTCGAACGCGCCAACATTCGACAGCTTTTATTG
AGAATGGAGCTGACGAACTGATACGTAAGGCTAGGTTGTTGCACAAAGAAGTACTAGAAG
ATGAAAGCAAAGCTGCATTGCGGGATCTAGAAGTCCATGTTGAACTAAAGGAAAGATGGA
AAGGAGAGAATGTTGGGATCACTTATTAGTTTATGATGTTGTCACCATTATACTGTTGTG
TTGAGTGTTTCAACCATTATGTAGTCGATATATATTTATTAACTTTCTTTTGGCGATTTT
TTTATCCTATTTTTATACACACGGAGGTTTATACACATAGGCAATTTGAAAATGATGTTT
ACAGCATTTTTATAGGAGATACGATAGAAAAGCGATTCTTTTTTTACGTTTGCATTCTTT
TGGTATTACAACATTCTGTTATGTTG

InterProScan

Gene3D	ARM-like (IPR011989) - T[67-450] 1.5E-32
SUPERFAMILY	ARM-type_fold (IPR016024) - T[122-459] 1.08E-30
SMART	Armadillo (IPR000225) - T[183-225] 11.0 - T[280-322] 17.0 - T[323-365] 0.045 - T[367-409] 4.6

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
ARMC6_HUMAN	37.421 %	322	2.87E-105