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  1. Transcript 'KH2012:KH.C4.547.v1....'

Transcript Model

Transcript Id

KH2012:KH.C4.547.v1.A.nonSL1-1

Possible name(s)

BMP2; BMP4; GDF5

Location

KhC4 [1,882,129 / 1,884,355]

Sequences

Amino acid sequence

Length: 494

>KH.C4.547.v1.A.nonSL1-1
LKMHRILLAGLCLFVALHFVYAQWDSVGVETKLTVDPVKLKAVKSDKQAHSRLNGFLTEN
FKNRESANEYGQFHISNREVYIKEQETEFQKLLRVNQISNIEAATFAGIDDDQPSVIRAL
LEKPKSAAKGCNLPGQNGNVVRSLRNKGRILYQDGMNLLLQLRYHFGVLPDFEKITSAII
YAALPGGNDQKSKWWEAHSGLEYTFRVYAISQHNWNELNLKLRSALAPNDRFSSNEFSDE
IAHILGEEISNRTVTFNSEHATTDSTHPLDVLPILSQWRRDSVRHGTASACRYILMVTKK
YQSEWSINSSENWAVSKWESFGSGQPRLLLVSIDSTQCTRAISETDDNRNDSKSVAGKGS
ATSEVKKHSSRDTEQAASTRKRKTRMATRSTICQRHSMWVDFEEMGWSDWVIAPRAFQSY
RCAGECPFPLSGKLNGTNHAMLMTMMNSVDPSNTPMPCCVPTRLSSVSMLYLDKKDNVVL
RLYEDMVVEACGCR

Nucleotide sequence

Length: 1,643

>KH2012:KH.C4.547.v1.A.nonSL1-1
TTAAAGATGCATCGAATACTGCTAGCTGGTTTGTGTTTATTCGTGGCACTGCATTTCGTG
TACGCGCAATGGGACTCTGTTGGTGTAGAGACTAAACTCACAGTTGATCCAGTAAAACTT
AAAGCTGTAAAGTCTGACAAGCAAGCCCATAGCCGTCTGAATGGATTTCTGACTGAAAAT
TTTAAAAATCGTGAATCTGCAAATGAATACGGACAATTTCACATCAGTAACAGAGAGGTG
TATATAAAAGAACAAGAAACTGAGTTTCAAAAGCTACTGAGAGTAAACCAGATATCAAAT
ATCGAAGCTGCCACTTTTGCTGGAATCGATGATGATCAACCAAGTGTTATTCGTGCTTTG
TTGGAAAAGCCAAAATCTGCAGCGAAAGGATGTAATCTGCCTGGACAAAATGGCAACGTT
GTACGGAGCCTTCGAAACAAAGGGCGGATTCTGTACCAAGATGGGATGAATTTACTGCTA
CAGTTGCGTTACCACTTTGGTGTTCTGCCAGACTTCGAAAAAATAACATCAGCAATTATT
TACGCCGCATTACCGGGTGGAAATGACCAGAAATCAAAGTGGTGGGAAGCACACAGTGGC
CTCGAATACACTTTCCGTGTGTACGCAATCTCACAGCATAACTGGAACGAACTGAATTTA
AAACTAAGAAGCGCATTAGCTCCAAACGATCGGTTTTCAAGCAACGAATTTTCCGACGAA
ATTGCTCATATACTTGGTGAAGAAATTTCTAATAGAACTGTTACATTTAACAGTGAACAC
GCTACTACTGATTCAACACATCCTCTCGACGTTCTACCGATTCTTAGCCAGTGGAGACGG
GATTCAGTTCGCCATGGTACAGCATCGGCATGCAGATACATTCTTATGGTGACAAAAAAA
TATCAATCCGAATGGTCTATAAATTCCTCTGAAAACTGGGCAGTTAGCAAGTGGGAAAGT
TTCGGTTCAGGCCAGCCCAGGCTCTTACTTGTGTCCATAGACAGTACACAATGTACACGG
GCGATATCCGAAACTGATGATAATAGAAACGACAGCAAAAGCGTTGCCGGTAAAGGTAGC
GCCACATCTGAAGTAAAAAAACACTCAAGCAGAGATACTGAACAGGCTGCCAGTACGCGT
AAGCGTAAAACTCGTATGGCTACACGGAGCACTATTTGCCAGCGACATTCAATGTGGGTG
GACTTTGAAGAGATGGGTTGGTCAGATTGGGTCATAGCTCCACGGGCGTTCCAGTCCTAC
AGATGCGCGGGGGAATGTCCTTTTCCATTAAGCGGCAAACTAAACGGTACCAACCATGCA
ATGTTAATGACAATGATGAATTCTGTAGATCCGTCTAACACCCCAATGCCTTGCTGTGTA
CCTACCCGGCTGAGTTCTGTATCTATGCTGTATTTGGATAAAAAGGACAACGTTGTGTTG
CGCCTGTACGAAGATATGGTAGTAGAGGCTTGTGGCTGCAGATGAACATTAAATTAAACC
GAACTACTGTACGGAATTTTTGCTATAGAGTTATTTGACTTTTTGTGTTGCAGCACACGT
AGATTTTATCGTTGCATTTTAAACCAAACGCGCCCACAAAGGCTTTTACCTTTAAATTTA
ATAAAACGATGAATTATTAAGCA

InterProScan

PANTHER
TGF-beta-rel (IPR015615) - T[3-494] 2.3E-91
Gene3D
Cystine-knot_cytokine (IPR029034) - T[378-494] 6.5E-40
ProSiteProfiles
TGF-b_C (IPR001839) - T[380-494] 40.795
SUPERFAMILY
Cystine-knot_cytokine (IPR029034) - T[388-494] 6.02E-39
Pfam
TGF-b_C (IPR001839) - T[393-493] 1.7E-30
SMART
TGF-b_C (IPR001839) - T[393-494] 3.2E-57
ProSitePatterns
TGFb_CS (IPR017948) - T[411-426] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
BMP2_HUMAN 48.837 % 150 9.98E-41
BMP4_HUMAN 47.826 % 151 6.41E-41
GDF5_HUMAN 45.205 % 146 2.03E-38