- Transcript 'KH2012:KH.C4.547.v1....'
Transcript Model
Transcript Id
KH2012:KH.C4.547.v1.A.nonSL1-1
Possible name(s)
BMP2; BMP4; GDF5
Gene model
Location
KhC4 [1,882,129 / 1,884,355]
Amino acid sequence
Length: 494
>KH.C4.547.v1.A.nonSL1-1
LKMHRILLAGLCLFVALHFVYAQWDSVGVETKLTVDPVKLKAVKSDKQAHSRLNGFLTEN
FKNRESANEYGQFHISNREVYIKEQETEFQKLLRVNQISNIEAATFAGIDDDQPSVIRAL
LEKPKSAAKGCNLPGQNGNVVRSLRNKGRILYQDGMNLLLQLRYHFGVLPDFEKITSAII
YAALPGGNDQKSKWWEAHSGLEYTFRVYAISQHNWNELNLKLRSALAPNDRFSSNEFSDE
IAHILGEEISNRTVTFNSEHATTDSTHPLDVLPILSQWRRDSVRHGTASACRYILMVTKK
YQSEWSINSSENWAVSKWESFGSGQPRLLLVSIDSTQCTRAISETDDNRNDSKSVAGKGS
ATSEVKKHSSRDTEQAASTRKRKTRMATRSTICQRHSMWVDFEEMGWSDWVIAPRAFQSY
RCAGECPFPLSGKLNGTNHAMLMTMMNSVDPSNTPMPCCVPTRLSSVSMLYLDKKDNVVL
RLYEDMVVEACGCR
Nucleotide sequence
Length: 1,643
>KH2012:KH.C4.547.v1.A.nonSL1-1
TTAAAGATGCATCGAATACTGCTAGCTGGTTTGTGTTTATTCGTGGCACTGCATTTCGTG
TACGCGCAATGGGACTCTGTTGGTGTAGAGACTAAACTCACAGTTGATCCAGTAAAACTT
AAAGCTGTAAAGTCTGACAAGCAAGCCCATAGCCGTCTGAATGGATTTCTGACTGAAAAT
TTTAAAAATCGTGAATCTGCAAATGAATACGGACAATTTCACATCAGTAACAGAGAGGTG
TATATAAAAGAACAAGAAACTGAGTTTCAAAAGCTACTGAGAGTAAACCAGATATCAAAT
ATCGAAGCTGCCACTTTTGCTGGAATCGATGATGATCAACCAAGTGTTATTCGTGCTTTG
TTGGAAAAGCCAAAATCTGCAGCGAAAGGATGTAATCTGCCTGGACAAAATGGCAACGTT
GTACGGAGCCTTCGAAACAAAGGGCGGATTCTGTACCAAGATGGGATGAATTTACTGCTA
CAGTTGCGTTACCACTTTGGTGTTCTGCCAGACTTCGAAAAAATAACATCAGCAATTATT
TACGCCGCATTACCGGGTGGAAATGACCAGAAATCAAAGTGGTGGGAAGCACACAGTGGC
CTCGAATACACTTTCCGTGTGTACGCAATCTCACAGCATAACTGGAACGAACTGAATTTA
AAACTAAGAAGCGCATTAGCTCCAAACGATCGGTTTTCAAGCAACGAATTTTCCGACGAA
ATTGCTCATATACTTGGTGAAGAAATTTCTAATAGAACTGTTACATTTAACAGTGAACAC
GCTACTACTGATTCAACACATCCTCTCGACGTTCTACCGATTCTTAGCCAGTGGAGACGG
GATTCAGTTCGCCATGGTACAGCATCGGCATGCAGATACATTCTTATGGTGACAAAAAAA
TATCAATCCGAATGGTCTATAAATTCCTCTGAAAACTGGGCAGTTAGCAAGTGGGAAAGT
TTCGGTTCAGGCCAGCCCAGGCTCTTACTTGTGTCCATAGACAGTACACAATGTACACGG
GCGATATCCGAAACTGATGATAATAGAAACGACAGCAAAAGCGTTGCCGGTAAAGGTAGC
GCCACATCTGAAGTAAAAAAACACTCAAGCAGAGATACTGAACAGGCTGCCAGTACGCGT
AAGCGTAAAACTCGTATGGCTACACGGAGCACTATTTGCCAGCGACATTCAATGTGGGTG
GACTTTGAAGAGATGGGTTGGTCAGATTGGGTCATAGCTCCACGGGCGTTCCAGTCCTAC
AGATGCGCGGGGGAATGTCCTTTTCCATTAAGCGGCAAACTAAACGGTACCAACCATGCA
ATGTTAATGACAATGATGAATTCTGTAGATCCGTCTAACACCCCAATGCCTTGCTGTGTA
CCTACCCGGCTGAGTTCTGTATCTATGCTGTATTTGGATAAAAAGGACAACGTTGTGTTG
CGCCTGTACGAAGATATGGTAGTAGAGGCTTGTGGCTGCAGATGAACATTAAATTAAACC
GAACTACTGTACGGAATTTTTGCTATAGAGTTATTTGACTTTTTGTGTTGCAGCACACGT
AGATTTTATCGTTGCATTTTAAACCAAACGCGCCCACAAAGGCTTTTACCTTTAAATTTA
ATAAAACGATGAATTATTAAGCA
| PANTHER |
TGF-beta-rel (IPR015615) - T[3-494] 2.3E-91 |
| Gene3D |
Cystine-knot_cytokine (IPR029034) - T[378-494] 6.5E-40 |
| ProSiteProfiles |
TGF-b_C (IPR001839) - T[380-494] 40.795 |
| SUPERFAMILY |
Cystine-knot_cytokine (IPR029034) - T[388-494] 6.02E-39 |
| Pfam |
TGF-b_C (IPR001839) - T[393-493] 1.7E-30 |
| SMART |
TGF-b_C (IPR001839) - T[393-494] 3.2E-57 |
| ProSitePatterns |
TGFb_CS (IPR017948) - T[411-426] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| BMP2_HUMAN | 48.837 % | 150 | 9.98E-41 |
| BMP4_HUMAN | 47.826 % | 151 | 6.41E-41 |
| GDF5_HUMAN | 45.205 % | 146 | 2.03E-38 |