Aniseed - Transcript Card

Transcript 'KH2012:KH.C4.479.v1....'

Transcript Model

Transcript Id

KH2012:KH.C4.479.v1.A.nonSL2-1

Possible name(s)

COPS7A; EIF3M; VCL

Gene model

KH2012:KH.C4.479

Location

KhC4 [2,952,365 / 2,956,335]

Sequences

Amino acid sequence

Length: 377

>KH.C4.479.v1.A.nonSL2-1
SPINCTMSVPAFIDLSEADQISELQQYFKSKNIEVKEEGVLFNDVKQLIISTAELWKDTE
GKDIEGVVNSILSLLFVIPIDKGCELVDLLCEQLLRGAESGKAPVSLNLLHNLFHGYPTK
TPFLCKVYSTWLKLAKVSRSIHLVPTNLKELSSWLEDWNAGEEGRQNVLRLLYEAQLNCG
RNKEAAETMITLLQSYTEENAGKAREDAIRCITKALADPNTYLFNQLLTLKPVTFLEGEP
LHDLLNIFVSGNIKEYKDFYETNKEFIESIGLSHTSNTRKMQLLTLVDNFGSAREISFDD
IIARLDISEDDVEEFIIDAIQSKLMRGRIDHVNRKVIVSQACQRIFGRAQWESLASRLEQ
WRDNINRVNGKLQTLQV

Nucleotide sequence

Length: 1,372

>KH2012:KH.C4.479.v1.A.nonSL2-1
AAGACGTTTGTTAGGTTTGTTTTGTTAGATAAATAGGAGTGTAATATCACTTTCCGACAC
CAGTTGATCACCAATAAACTGCACAATGAGTGTACCGGCTTTTATTGACCTTTCTGAAGC
CGATCAGATTTCAGAGCTTCAACAATATTTCAAAAGTAAAAACATTGAAGTGAAGGAAGA
AGGGGTTTTGTTCAATGATGTCAAACAACTTATTATTTCGACTGCAGAACTATGGAAAGA
CACAGAAGGAAAAGATATCGAAGGAGTGGTAAACAGCATTCTTTCCTTGCTATTTGTTAT
TCCAATCGACAAAGGATGTGAGCTTGTGGATCTTTTGTGTGAGCAATTGTTAAGGGGCGC
TGAAAGTGGAAAAGCACCTGTCAGTTTAAACTTATTACATAATCTGTTCCATGGTTATCC
AACAAAAACTCCATTTCTCTGCAAAGTATATTCTACTTGGTTAAAACTTGCCAAAGTAAG
CAGAAGCATTCACCTCGTACCAACAAACTTGAAAGAATTATCTTCATGGTTGGAGGATTG
GAATGCAGGAGAAGAAGGTCGACAGAATGTGCTGAGACTTTTATACGAAGCACAATTGAA
CTGTGGGAGAAACAAGGAAGCTGCTGAAACAATGATCACTTTACTTCAATCTTATACCGA
GGAAAATGCTGGAAAAGCAAGAGAAGATGCCATTAGGTGCATAACGAAGGCATTAGCCGA
CCCAAACACATACTTGTTCAATCAACTACTTACTTTAAAACCTGTCACATTCTTAGAAGG
TGAACCTTTACATGATCTTCTCAACATCTTTGTGAGTGGAAACATCAAAGAATACAAAGA
TTTCTATGAAACAAACAAAGAATTTATTGAATCTATAGGTTTGTCCCACACAAGCAACAC
AAGGAAAATGCAACTTCTAACATTGGTCGATAACTTCGGTTCAGCAAGAGAAATAAGTTT
TGATGACATCATAGCACGACTTGACATATCTGAAGATGACGTTGAAGAATTCATAATTGA
TGCCATTCAAAGCAAACTTATGAGAGGAAGGATAGACCATGTCAACCGTAAAGTGATTGT
CAGTCAAGCATGCCAGCGTATATTTGGACGCGCTCAGTGGGAATCCCTCGCCTCCCGTCT
TGAGCAGTGGAGAGATAATATCAACCGAGTTAACGGCAAACTACAAACATTACAAGTTTA
AAATAGATCTTAAGAATTACGTTTTGTTATTATAGTGCGAATATTTGCGTTTTGCGTGAA
AAGAAATAAGAATGTCTGGTGACATAAGTAATTATTGGATTATGTCGGATTTTTGATGCG
AATTTATGTGGTGTTCCAATCATCTTATGCTAGAAATAAAGATGCAAACCCA

InterProScan

Hamap	eIF3m (IPR027528) - T[7-377] 21.868
Pfam	PCI_dom (IPR000717) - T[240-339] 3.5E-16
SMART	PCI_dom (IPR000717) - T[272-361] 4.6E-14
SUPERFAMILY	WH_DNA-bd_sf (IPR036390) - T[281-340] 1.07E-6

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
EIF3M_HUMAN	46.237 %	345	2.68E-117