- Transcript 'KH2012:KH.L152.2.v1....' >
- Region 'REG00001519' >
- Transcript 'Moocci.CG.ELv1_2.S38...' >
- Transcript 'KH2012:KH.C4.394.v1....'
Transcript Model
Transcript Id
KH2012:KH.C4.394.v1.A.SL1-1
Possible name(s)
TRAF2; TRAF4; TRAF6
Gene model
Location
KhC4 [1,603,286 / 1,614,244]
Amino acid sequence
Length: 474
>KH.C4.394.v1.A.SL1-1
TAIQFAMPGYQNKFVDKVRKRHQCPLCHFPMRDPVQITACRHRYCDTCLQKFLGEGVFNC
PVDHLSLDYAKIYPDPDLETEIMSLTTHCTNYSSGCKWTGKLHNLKAHMDKCSHSERDCP
NRCGVRIRSMKLADHLEYECMKRRVACDFCGKEFTGEMMDEHEGACPQESVHCENKCGAK
MLRKYLSRHVTGDCPKRPTKCTHCSKDFNIDILQTHHGTCPRYPIGCPNRCDVLKIPREE
LEIHLKEHCKSALTACPFKEAGCKHKCPRYHLERHLTEANASHIRAMFDLVKTQRSHISE
LQKQLSDLTVNTNGTLLWKIPGYSQKLQAAQKDQAIEMRSPPFYTHRYGYKLQLSAFLNG
NGSGLNSHMSLYIRVLPGDYDSLLEWPFSHDITFTILDQGDPLSSKRSHISVRFTPDPTW
KNFQQPTADGDDDSTLGFGYPKFVSHKELKDNCYLKGNSLFIKAVVDISRIVIP
Nucleotide sequence
Length: 1,819
>KH2012:KH.C4.394.v1.A.SL1-1
GTATTGCTTTCTAGTAGGCGAATAGGTTAGTTGTTAAAACGAGAATCTCTGGTAAACTGC
AATTCAATTCGCGATGCCTGGTTACCAAAACAAGTTTGTGGACAAGGTCCGAAAGCGACA
TCAATGCCCGTTATGCCACTTTCCAATGAGAGACCCAGTTCAGATCACCGCATGCAGACA
TAGATACTGTGATACATGTCTTCAGAAATTCTTAGGAGAGGGTGTCTTCAATTGTCCAGT
GGACCACCTGTCATTGGATTACGCCAAGATCTACCCCGACCCGGATCTGGAAACAGAAAT
AATGTCGTTGACTACACATTGCACAAACTACTCGAGTGGTTGCAAATGGACAGGGAAGCT
TCATAATTTAAAGGCACATATGGACAAGTGCAGCCACAGCGAACGTGATTGCCCGAACAG
ATGCGGCGTTCGTATAAGGTCTATGAAATTGGCCGATCACCTTGAATACGAATGCATGAA
AAGACGAGTGGCTTGCGACTTTTGTGGAAAAGAATTCACGGGAGAAATGATGGACGAGCA
CGAGGGGGCGTGCCCGCAAGAGAGCGTCCACTGTGAGAATAAATGTGGAGCCAAAATGTT
GAGAAAATATCTATCTCGTCACGTGACTGGAGATTGTCCTAAGAGGCCAACCAAATGCAC
GCACTGCTCAAAAGATTTCAACATCGATATATTGCAGACGCATCACGGCACTTGTCCAAG
ATACCCGATCGGTTGCCCGAATCGTTGTGACGTGCTTAAAATTCCACGAGAGGAGCTTGA
AATTCACTTGAAAGAACATTGCAAGTCCGCGCTTACTGCTTGTCCATTCAAAGAAGCTGG
CTGCAAACACAAGTGTCCAAGGTATCATCTCGAGCGCCACCTTACGGAAGCCAACGCGTC
GCATATCAGGGCAATGTTTGACCTCGTTAAAACTCAACGAAGCCACATCAGCGAGCTCCA
GAAACAACTGAGCGACCTCACGGTGAACACGAACGGTACACTTCTGTGGAAAATACCTGG
TTACTCACAGAAACTACAGGCAGCACAGAAAGACCAAGCCATAGAAATGCGAAGTCCACC
ATTCTACACACACCGGTACGGTTACAAACTTCAGTTGTCTGCATTCTTAAACGGCAACGG
TAGCGGCCTTAACTCTCACATGTCCCTCTACATTCGTGTCCTTCCTGGCGATTACGACTC
ACTCTTGGAGTGGCCGTTTTCCCATGACATCACCTTTACCATATTAGACCAAGGCGATCC
ACTGTCATCAAAAAGAAGCCACATCAGCGTCCGTTTCACGCCGGACCCAACATGGAAAAA
CTTTCAGCAGCCAACAGCAGACGGAGACGATGACTCCACGTTGGGGTTCGGCTACCCAAA
ATTTGTGTCCCACAAAGAACTTAAAGACAATTGCTATCTCAAGGGCAACTCTCTCTTTAT
CAAGGCTGTTGTGGACATTTCACGCATCGTGATACCATAATCATACATTCTGCTACCCTA
TAAGTTTCATAGCCCAAAGAAGGGAGGTACGAAAACATGCTGGATATGTTTTATATTTAC
TGTGTACATATACGCAACTTATACATTACTTCTCTATGTCTCGTGTATTCTGCTTTTTGT
CAAACCATGCATGCTTTCAAAAACCCTCATTAAAAATAGAACATCTGTAATTGTCCATTA
AACTATATACCTGCATCTCTGTAAGAAAATGTGTCTCATCATATTCCAATTGTAAACAAT
CAATGTTCGCTGTTTGTCCCACTTTATTTTGTCCAACTTTTCTTTCTTTTTCTTCCTTGA
ATTAAACTCAAATCAAACG
| PIRSF |
TNF_rcpt--assoc_TRAF (IPR012227) - T[2-185] 2.0E-47 - T[169-298] 4.2E-28 - T[282-474] 6.3E-68 |
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[15-85] 1.2E-10 - T[86-136] 2.8E-8 - T[138-193] 1.6E-16 - T[194-254] 1.5E-20 |
| SMART |
Znf_RING (IPR001841) - T[24-63] 0.0062 |
| ProSiteProfiles |
Znf_RING (IPR001841) - T[24-64] 10.453 |
| ProSitePatterns |
Znf_RING_CS (IPR017907) - T[40-49] . |
| SUPERFAMILY |
TRAF-like (IPR008974) - T[84-145] 1.57E-11 - T[144-204] 2.16E-7 - T[313-471] 1.54E-39 |
| ProSiteProfiles |
Znf_TRAF (IPR001293) - T[107-159] 12.796 - T[162-214] 13.729 - T[215-273] 15.533 |
| Pfam |
Znf_TRAF (IPR001293) - T[108-162] 2.4E-8 - T[216-275] 9.8E-16 |
| Gene3D |
TRAF-like (IPR008974) - T[288-473] 5.2E-63 |
| ProSiteProfiles |
MATH/TRAF_dom (IPR002083) - T[313-466] 19.675 |
| CDD |
TRAF4_MATH (IPR037307) - T[314-467] 8.24103E-110 |
| SMART |
MATH/TRAF_dom (IPR002083) - T[318-449] 1.5E-10 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TRAF4_HUMAN | 51.386 % | 550 | 0 |
| TRAF2_HUMAN | 28.101 % | 182 | 9.89E-52 |
| TRAF6_HUMAN | 27.273 % | 180 | 5.39E-51 |