- Transcript 'KH2012:KH.C4.336.v1....'
Transcript Model
Transcript Id
KH2012:KH.C4.336.v1.A.ND1-1
Possible name(s)
LRRC1; LRRD1; SHOC2
Gene model
Location
KhC4 [3,455,695 / 3,462,321]
Amino acid sequence
Length: 934
>KH.C4.336.v1.A.ND1-1
AEFCEQRTAHVRNLTDGAFFLNFSALNLEELPVELFEDEFLYEKCEKYLIGLDVSDNRLK
SLDQEIGDFANLKTLNCSKNKLRFLPTSICALEFLTELNATYNQLIVLPRNIYKCSMLTT
IRAAHNKLRALPTSIGSIPTLLISLPKSVYQIRKVINCSSNKLHRLPEPETKKSKSGLQL
IRCIEASHNEIESLPRNLSFLTNLQSLSLSNNQLTELPQNIGELQKLITVDVCQNSLSEI
PDSFGNLSNLRLLDLRENKLTTLPESMSRLEDLITLDCAGNQIKTIPEELKQIKSLQNID
LSANQIESVPTLSNMSNLVTVDLSRNAISTLGDIEDMPSMENLNLSENQLAKVPDSIGNI
ESLENFRLANNQIQELPQTIGNLSSLQFIDVSNNQLTSLNTSLRRLGTLEILKAGNNQLT
TLPQPFGFLRSLREVDLSNNKLNTLVGNGPLPRGIKRLKANGNLFKGKVPGRVLHELRLL
TVLDLSSSEITSLPDSIGRLRLLQNLNLENNQLHSLPESSETMYSLKDINLSKNAIKKLP
QNLHNWKRLVTMNAAHNKLAEMPENLHQLPVLATLDMSNNELEQIDANIFHMSRLKVLRL
QNNRINRINKTTNDVTLSSSLHEVDFSGNELEELLEDMEVLSSVRWFDASCNKLSEIPED
IHKLKWATYLNFSENKIQKIPKKVDRLKSIENFKLANNQITQIPQNIKRCKHLSHLDITG
NSISDFPQGFFKMRKLNELLSQGNPLTCKLPEKFRVADEPKSSPLNYKGEIGLATDRNIG
QEKSVTKVLTTKSEFTTVTSCTEKKSALKESESSTNVVQNEPTIVDTDVPQQKERAVSQK
TNKLKKKMSKSNEVSEAERLLLTITSSPGNNQSQSTSQSVVSLDEQTVGHVGTIESKKVG
KTCKQKRGVVGAKSSKLALSTTKPSVTPAIQATV
Nucleotide sequence
Length: 3,267
>KH2012:KH.C4.336.v1.A.ND1-1
ATGCCTTTAAGAAAACCAACCGGACGTTCCAAGTTGGATTTTGCGACGGTTCAGCGGAGA
AGAAAATTAAAGAGCCCAAAATCGCGAGATAAAGAAGCTGACAGAGTTTTAAGCCGAGTT
TTGCGAGCAACGAACGGCACACGTAAGGAATTTGACCGATGGGGCGTTTTTTCTCAACTT
TTCGGCGCTAAATTTGGAAGAATTACCGGTAGAATTGTTTGAGGACGAATTTTTATATGA
AAAGTGCGAAAAATATTTGATTGGACTCGACGTGTCTGATAACCGCTTGAAAAGCTTGGA
CCAAGAAATCGGGGATTTCGCGAACTTGAAGACTTTGAACTGTTCAAAGAATAAATTACG
TTTTCTGCCAACTTCCATATGTGCTCTGGAATTCTTGACCGAACTAAACGCAACGTACAA
TCAGTTGATCGTCTTGCCACGTAATATTTACAAATGTTCGATGCTCACCACGATAAGGGC
GGCACACAACAAACTGCGTGCATTACCCACAAGCATCGGGTCCATCCCAACACTCCTTAT
ATCTCTGCCAAAATCAGTCTACCAGATTCGTAAAGTAATAAACTGTTCAAGCAACAAACT
TCATCGGTTACCGGAGCCAGAAACGAAGAAATCAAAAAGCGGCTTACAACTTATTCGATG
CATTGAAGCATCTCATAATGAAATCGAATCTCTACCAAGAAACTTGTCATTTCTGACAAA
CCTACAGTCTCTAAGTTTGTCCAACAACCAGCTAACGGAATTACCACAGAACATCGGAGA
GTTACAGAAACTGATCACTGTCGATGTCTGTCAGAATTCTTTGTCTGAAATCCCCGACAG
TTTCGGCAATTTATCGAACCTACGTTTGTTGGATTTGAGAGAAAATAAGTTGACCACTTT
ACCCGAGTCTATGAGTCGGTTGGAAGACCTGATAACTCTCGACTGCGCAGGCAATCAAAT
TAAAACAATTCCGGAAGAATTGAAACAGATCAAAAGCTTACAGAATATTGATCTTTCAGC
GAACCAGATAGAGAGTGTACCAACATTGTCGAATATGAGCAACCTCGTCACAGTTGATCT
TTCACGGAACGCCATATCTACACTCGGAGATATTGAGGACATGCCTTCCATGGAGAATTT
GAACCTTTCGGAAAATCAACTGGCCAAAGTACCAGATAGCATCGGAAACATCGAATCGCT
GGAAAACTTTCGTCTAGCCAACAACCAGATTCAAGAGTTGCCACAAACAATTGGAAACCT
CAGCTCCCTGCAGTTTATTGACGTCAGCAACAACCAACTGACGTCACTTAACACGTCACT
AAGGCGACTTGGAACTCTGGAAATCTTAAAAGCTGGAAACAACCAACTAACAACTTTACC
TCAACCGTTCGGATTTCTCCGGTCCTTACGTGAAGTGGATTTATCAAATAACAAGTTGAA
TACATTAGTTGGAAATGGCCCGTTACCGCGCGGAATAAAACGGTTGAAAGCAAATGGGAA
TTTATTCAAAGGCAAAGTTCCCGGTCGTGTTTTGCACGAGCTCCGACTGTTAACCGTCCT
TGATTTATCCTCCTCTGAAATTACGTCACTTCCTGACAGCATCGGAAGATTACGTTTGCT
GCAAAACTTAAACCTTGAAAATAATCAGCTGCATTCACTTCCCGAATCAAGCGAGACGAT
GTACTCGCTCAAAGACATCAATCTGTCAAAGAACGCAATCAAAAAATTGCCGCAAAACTT
ACATAATTGGAAAAGATTAGTGACAATGAATGCTGCCCATAACAAACTCGCTGAAATGCC
AGAAAATTTACATCAGTTACCTGTACTTGCAACACTGGACATGTCGAACAATGAGCTTGA
GCAGATTGATGCAAATATCTTTCACATGAGTCGTTTGAAGGTTTTGCGATTACAAAACAA
TCGCATAAACCGCATCAACAAAACGACCAATGACGTCACCTTATCCTCAAGTTTGCACGA
AGTTGATTTTTCTGGCAACGAATTAGAAGAATTGTTAGAAGACATGGAAGTTCTTTCATC
CGTTCGTTGGTTTGATGCATCATGCAATAAATTATCGGAAATACCAGAAGACATTCACAA
ACTGAAATGGGCAACTTATCTAAACTTCAGCGAGAATAAGATCCAGAAGATTCCTAAAAA
AGTAGATCGGTTGAAATCGATTGAAAATTTCAAGTTGGCGAACAATCAAATCACTCAAAT
ACCGCAAAACATCAAGAGATGCAAACATTTGTCTCACCTTGATATAACAGGAAACAGCAT
CTCAGACTTCCCACAAGGATTCTTTAAAATGCGTAAACTTAACGAGCTATTAAGTCAAGG
CAACCCTCTAACTTGTAAGTTACCTGAGAAATTCAGAGTCGCCGACGAACCAAAGTCCAG
CCCACTCAATTATAAAGGAGAGATTGGACTCGCCACTGACAGAAATATTGGACAAGAAAA
ATCTGTTACTAAAGTGCTTACAACAAAATCTGAATTTACAACCGTAACAAGTTGTACGGA
GAAAAAGTCCGCGTTAAAAGAAAGCGAAAGCTCAACGAATGTAGTTCAAAATGAGCCGAC
CATTGTGGATACAGATGTACCGCAGCAGAAAGAACGCGCTGTTTCACAAAAGACGAACAA
ACTGAAGAAGAAAATGTCCAAGTCTAATGAAGTAAGTGAAGCGGAACGGTTGCTCTTAAC
AATAACGTCATCACCGGGAAACAACCAATCACAGTCGACCAGCCAATCCGTTGTAAGTTT
GGATGAACAAACAGTGGGCCATGTGGGGACGATTGAGAGCAAAAAAGTGGGCAAGACGTG
CAAACAAAAGCGGGGCGTCGTTGGTGCAAAGTCATCTAAACTTGCTTTGTCGACTACAAA
ACCATCCGTCACACCAGCTATACAAGCAACTGTATAAATGTGACACTAATGGGACGTTTA
TACAAATGGTTGTTAAAGAGCCAATATACTCAACTGAATAAATCAATTCAAATCACTGCT
CAATTTTGACTAATGACAAAATATGTGAGAATTTAATAAGATGTAATATTAAAAGTCTCA
TGTGAAAACATAAAGTTAAAATTCTTTTGTAAAACAACAGCACATACATACACTGTAAAA
TTTGTATTCGCAAATTAATTTTATTGTTTTGATATCTTTCAGTTTATAAATATAGAAGAG
TTTTTGTACCATTTGCGCACATGTATATGCACTTATAGAGCTCGAAAATTAGCGTTGCAA
TATAAAATTGTTGATAATAAACAAATA
| Gene3D |
LRR_dom_sf (IPR032675) - T[9-148] 1.5E-16 - T[149-450] 2.5E-69 - T[451-613] 6.6E-32 - T[614-763] 1.3E-29 |
| ProSiteProfiles |
Leu-rich_rpt (IPR001611) - T[48-69] 5.402 - T[71-92] 6.156 - T[94-115] 4.732 - T[180-202] 5.833 - T[203-225] 8.336 - T[226-247] 5.194 - T[249-270] 7.481 - T[272-293] 6.426 - T[295-316] 8.42 - T[317-338] 7.427 - T[339-360] 6.387 - T[362-383] 6.203 - T[385-407] 6.657 - T[408-430] 5.625 - T[431-452] 7.25 - T[479-500] 6.441 - T[502-523] 7.573 - T[525-547] 6.772 - T[548-569] 5.178 - T[571-592] 6.426 - T[594-615] 6.295 - T[620-642] 5.425 - T[643-664] 5.633 - T[666-687] 5.271 - T[689-710] 5.871 - T[712-733] 6.303 |
| SMART |
Leu-rich_rpt_typical-subtyp (IPR003591) - T[69-91] 380.0 - T[92-115] 18.0 - T[201-222] 0.037 - T[224-246] 38.0 - T[247-270] 0.008 - T[293-314] 110.0 - T[315-336] 110.0 - T[337-359] 13.0 - T[360-382] 54.0 - T[383-405] 21.0 - T[406-428] 150.0 - T[429-452] 9.4 - T[477-499] 23.0 - T[500-522] 49.0 - T[523-545] 31.0 - T[569-592] 0.33 - T[593-615] 380.0 - T[641-664] 100.0 - T[687-710] 24.0 - T[711-733] 140.0 |
| Pfam |
Leu-rich_rpt (IPR001611) - T[227-283] 5.0E-9 - T[295-350] 1.1E-7 - T[502-559] 1.1E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LRRD1_HUMAN | 24.83 % | 183 | 8.4E-48 |
| LRRC1_HUMAN | 30.714 % | 162 | 1.73E-42 |
| SHOC2_HUMAN | 31.944 % | 186 | 5.74E-50 |
