- Transcript 'KH2012:KH.C4.335.v2....'
Transcript Model
Transcript Id
KH2012:KH.C4.335.v2.A.SL2-2
Possible name(s)
LRP1; LRP2; LRP4
Gene model
Location
KhC4 [429,165 / 439,480]
Amino acid sequence
Length: 570
>KH.C4.335.v2.A.SL2-2
KPIAVNILIFTDEKTEMNNSYTPKAWIIFCLAIITIVCVTSMPECKCKRKQFACSVSNKC
TCIPVAWKCDGDTDCGDASDEMDCVIPTCRPSSFQCDNGKCIMAEWKCDGENDCGDDSDE
VSCPIQPCDESTEKTCGSGDCVPKRWWCDGDEDCSDGSDETDCNRRTCGGTEYACTSGEC
VSSAFNCDGDFDCRDGSDEECEEPADPDVIPSNSNFTACKDEEFSCAGSDSEVGHGQLDF
CIPFEYVCDQELDCDNGIDERNCSKLTFSFSHPCTDEQYRCGNGQCIGLHNHCDGQDDCG
DGTDEINCPEYEECIYGEFKCKSGMCISEAWRCDGDSDCNDGSDEQNCHEEPLGCNDDQF
ECFTSKRCIRISWRCDGEHDCSDQSDEIECDTCGSGKHRCNNGQCIGMHKVCDGVVDCLD
SSDESPRRACNGSNMLPTNFTSCADNNGGCEHTCRESLSGRAQCICRKGFELSPDLSSCI
DLNECNEEASCSQVCNNTIGSFVCSCLHGYILRPDSRTCKASGPEPALLFTNRIDIRKIL
PDRSEFRSILRDLENAIGLDSTTLACFTWR
Nucleotide sequence
Length: 2,172
>KH2012:KH.C4.335.v2.A.SL2-2
CAGACATATCGTCGGTTAGAGCTCAGGTTTAAACGATCTGTAATTTCATAATGGGTTCAC
TTACCACAGATGTATGTTAGCTAACTGATAGTTTATGAATGTTTCAATACTTGGAGTTAC
ATGTGGACATTCTCGAAATAGTTCACTGAATGAAAGTGACACCCAGGATTAAGTTTTGCG
GCATTTGTAGAAGCCAATTGCCGTCAATATTCTGATTTTTACCGATGAAAAGACTGAGAT
GAATAATTCCTACACACCGAAAGCCTGGATTATTTTCTGCTTGGCAATCATTACCATTGT
GTGTGTTACATCAATGCCAGAGTGCAAATGCAAACGAAAACAGTTTGCATGCTCTGTTAG
TAACAAATGTACGTGCATACCAGTAGCTTGGAAATGTGATGGAGACACCGACTGTGGAGA
TGCGAGTGATGAAATGGACTGTGTAATACCCACATGTCGACCCTCTTCGTTTCAATGCGA
CAATGGAAAATGCATCATGGCAGAATGGAAATGCGATGGTGAAAACGACTGTGGTGACGA
TAGTGACGAAGTTTCGTGCCCGATCCAGCCATGCGACGAATCGACGGAGAAGACGTGTGG
ATCTGGCGATTGTGTGCCGAAAAGATGGTGGTGTGACGGTGATGAAGATTGTTCTGATGG
AAGTGATGAAACTGATTGTAATCGTCGAACTTGTGGTGGTACAGAATACGCATGCACAAG
TGGAGAGTGTGTGAGTTCAGCATTTAATTGCGATGGTGATTTTGATTGTCGGGATGGCTC
GGATGAAGAATGTGAAGAACCAGCAGACCCGGACGTTATCCCAAGCAATTCAAACTTTAC
CGCATGTAAGGACGAGGAGTTTTCGTGCGCAGGCAGCGACTCTGAAGTCGGCCACGGTCA
ACTTGACTTTTGCATTCCATTCGAATATGTATGCGACCAAGAGCTTGACTGTGATAACGG
AATTGATGAACGAAATTGCAGTAAGTTAACGTTTAGTTTTAGTCACCCATGTACCGATGA
ACAATATAGATGTGGTAATGGCCAATGTATTGGCTTGCATAATCACTGTGACGGCCAAGA
CGACTGTGGAGACGGGACGGATGAAATCAACTGTCCTGAATATGAGGAATGTATTTATGG
AGAGTTTAAATGTAAAAGCGGGATGTGCATAAGTGAAGCGTGGAGGTGTGATGGAGATAG
CGACTGCAATGATGGATCTGATGAACAGAATTGTCATGAAGAACCACTAGGTTGCAACGA
CGATCAGTTCGAATGTTTCACCAGCAAACGATGCATTCGTATAAGTTGGAGATGCGATGG
CGAACATGACTGTTCGGATCAAAGTGACGAAATAGAATGTGATACTTGTGGGAGTGGAAA
ACACAGATGCAACAATGGACAATGTATTGGAATGCACAAAGTATGTGATGGAGTTGTCGA
CTGCCTCGACTCCTCTGATGAAAGTCCAAGGAGAGCATGCAATGGTTCGAACATGCTACC
GACCAATTTTACTTCATGCGCTGATAATAATGGAGGATGCGAACACACTTGTAGAGAATC
TTTATCAGGAAGGGCTCAATGTATTTGTCGGAAAGGATTTGAACTGTCACCCGATCTTTC
TAGTTGCATTGATTTAAATGAATGTAACGAAGAGGCATCGTGTAGTCAGGTTTGCAACAA
TACGATCGGGAGTTTTGTATGTTCTTGTTTGCATGGATACATTCTACGGCCTGATAGCAG
AACTTGCAAGGCAAGTGGTCCTGAGCCAGCTCTCTTGTTTACCAACCGCATCGATATTCG
AAAAATACTTCCCGATCGCTCCGAGTTTCGATCCATTTTACGAGACCTGGAGAATGCCAT
TGGTTTAGATAGTACCACCTTGGCTTGCTTTACCTGGAGATAGCTTGCCATGACCCTGTG
TAGAAAGGTTACTAGGTTGTTCACACTCCAAGGCACAAGTGAAACAGCCGCGTTCACAGT
TTGACCACCTAGTTCCGTTTCAGGGTTTCCACAACGAAAATTACACAGTACTGTTGTTAA
TGGCATTTTAATATCGTTTGCTTGTAACAAAGCTTATCTATTGACCTAATTTGTTAGTTT
TGTTTTATAGCATATATTTGTTGTTTACAATTTTAACTAAACAAAATTAAAAGAATAAAA
TGTTTTTTTTTG
| PANTHER |
LRP4 (IPR030799) - T[45-227] 1.8E-140 - T[214-560] 1.8E-140 |
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[45-86] 4.45E-8 - T[83-124] 9.16E-12 - T[127-164] 8.77E-9 - T[166-200] 1.3E-7 - T[217-264] 5.89E-6 - T[270-309] 1.14E-10 - T[313-348] 3.27E-11 - T[354-390] 2.09E-9 - T[392-426] 5.37E-10 |
| Pfam |
LDrepeatLR_classA_rpt (IPR002172) - T[46-84] 6.6E-8 - T[88-123] 1.1E-12 - T[127-163] 3.0E-9 - T[166-200] 2.4E-9 - T[273-308] 6.6E-8 - T[313-348] 1.7E-12 - T[355-390] 8.8E-10 - T[392-428] 1.5E-9 |
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[46-85] 12.762 - T[88-124] 14.413 - T[127-164] 13.375 - T[167-202] 12.775 - T[218-264] 11.675 - T[273-309] 13.488 - T[313-349] 14.425 - T[354-391] 13.025 - T[392-431] 12.05 |
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[46-86] 7.5E-11 - T[88-125] 7.2E-14 - T[127-165] 4.2E-11 - T[167-203] 4.2E-8 - T[218-265] 1.6E-4 - T[273-310] 8.2E-12 - T[313-350] 1.3E-13 - T[354-391] 1.1E-6 - T[392-432] 3.7E-12 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[47-84] 3.70379E-5 - T[89-123] 2.16368E-8 - T[131-163] 6.55136E-7 - T[168-200] 3.29176E-5 - T[274-308] 3.74456E-8 - T[314-348] 5.54796E-9 - T[355-390] 1.63126E-6 - T[393-424] 2.08476E-6 |
| PRINTS |
LDrepeatLR_classA_rpt (IPR002172) - T[99-120] 3.2E-53 - T[139-160] 3.2E-53 - T[178-199] 3.2E-53 - T[284-305] 3.2E-53 - T[324-345] 3.2E-53 - T[366-387] 3.2E-53 |
| ProSitePatterns |
LDLR_class-A_CS (IPR023415) - T[101-123] . - T[141-163] . - T[180-201] . - T[326-348] . - T[405-430] . |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[439-480] 1.4 - T[481-520] 9.9E-9 |
| SMART |
EGF-like_dom (IPR000742) - T[442-480] 0.0096 - T[484-520] 0.0082 |
| Pfam |
EGF-like_Ca-bd_dom (IPR001881) - T[481-519] 8.2E-8 |
| ProSitePatterns |
EGF_Ca-bd_CS (IPR018097) - T[481-504] . |
| ProSitePatterns |
EGF-type_Asp/Asn_hydroxyl_site (IPR000152) - T[495-506] . |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[504-519] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LRP2_HUMAN | 36 % | 279 | 1.59E-81 |
| LRP4_HUMAN | 43.856 % | 363 | 1.32E-110 |
| VLDLR_HUMAN | 37.618 % | 284 | 9.91E-86 |