- Transcript 'Moocci.CG.ELv1_2.S19...' >
- Transcript 'Haaura.CG.MTP2014.S1...' >
- Transcript 'KH2012:KH.C9.708.v1....' >
- Transcript 'KH2012:KH.L172.2.v1....' >
- Transcript 'KH2012:KH.C4.316.v1....'
Transcript Model
Transcript Id
KH2012:KH.C4.316.v1.R.ND2-1
Possible name(s)
TBL1X; TBL1XR1; TBL1Y
Gene model
Location
KhC4 [4,008,695 / 4,017,459]
Amino acid sequence
Length: 552
>KH.C4.316.v1.R.ND2-1
FQHSAFMFGLESHISQSNINGALVPPAALISIIQKGLQYVEAEISINQDGMVYEGRFTEG
LSLVDAVMPDVVIAKQQQLHEKMLAEKLKKEKLEKAEDGNAVNSVSTNDSCQTVTTVTDT
TATNNNSVTSSYNTPTVPTSTTPTANIKQESPQTNGQHSVLVTNATNATPNEQSEPMEVD
LNHSDITVSLNKSTVLRGHDSEVFICAWNPVQDLLASGSGDSTARIWNMKEEVVNASPSA
AISRQQLVLRHCIKDGNQEVPSNKDVTSLDWNCDGTLLATGSYDGYARLWATNGRLENVL
GQHKGPIFALKWNKKGNYILSAGVDKTTIIWDATTGEAKQQFPFHQAPALDVDWQNNTCF
ASCSTDMSIHVCRLGLDRPVKTFDGHSNEVNAIKWDPSGTLLASCSDDMTLKVWSMNQDN
FVHDLRAHSKEIYTIKWSPAGPGSNNPNQNLMLASASFDSTVRLWELEKGACLHTLTKHH
EPVYSVAFSPDGRLLASGSFDKCVHIWSTQTGRLVHSYEGTGGIFEVCWNSSGNKVGASA
SDGTVCVLDLRK
Nucleotide sequence
Length: 1,912
>KH2012:KH.C4.316.v1.R.ND2-1
GTTTCCAACACAGTGCGTTCATGTTTGGTCTCGAATCTCACATCAGTCAATCAAATATAA
ATGGGGCTCTTGTACCACCTGCTGCACTCATCTCTATTATTCAAAAGGGATTACAATATG
TGGAAGCTGAGATTAGCATTAACCAAGATGGAATGGTATATGAAGGAAGATTCACTGAAG
GATTATCCCTGGTTGATGCTGTAATGCCGGATGTAGTTATTGCCAAGCAACAACAACTGC
ATGAGAAAATGTTAGCTGAGAAACTTAAAAAGGAAAAATTGGAGAAAGCTGAAGACGGCA
ATGCCGTGAACTCTGTATCAACCAATGACAGTTGTCAAACTGTAACAACTGTAACCGATA
CTACAGCAACGAACAATAATTCCGTCACATCGTCATACAACACGCCTACTGTTCCTACTT
CCACCACTCCTACTGCTAATATTAAGCAGGAAAGCCCTCAAACAAATGGCCAACACAGTG
TTCTAGTTACGAATGCAACAAATGCGACTCCAAACGAGCAAAGTGAACCAATGGAGGTCG
ATTTAAATCATTCAGACATCACAGTTTCATTGAATAAATCAACAGTTTTAAGGGGCCATG
ATTCTGAAGTCTTTATTTGTGCCTGGAATCCCGTACAGGACCTACTAGCCTCAGGATCTG
GCGACTCAACTGCCCGTATATGGAACATGAAAGAGGAAGTTGTTAATGCTAGTCCAAGTG
CTGCTATATCGAGGCAACAGTTGGTTTTACGACATTGCATTAAAGATGGAAACCAAGAAG
TTCCAAGTAATAAAGACGTTACCTCACTAGATTGGAATTGTGATGGAACATTATTAGCTA
CTGGATCTTATGATGGTTATGCAAGGTTATGGGCAACTAATGGTCGACTCGAAAATGTCC
TGGGTCAACATAAGGGTCCAATTTTTGCTTTGAAATGGAACAAAAAAGGAAACTACATAC
TTAGTGCTGGTGTTGACAAGACAACTATAATATGGGACGCTACAACGGGCGAAGCAAAAC
AACAATTTCCGTTCCACCAAGCCCCAGCATTAGATGTGGATTGGCAAAACAACACTTGCT
TTGCGTCCTGTTCAACAGACATGAGCATCCATGTGTGTAGGCTTGGTCTGGATAGGCCAG
TAAAAACATTTGATGGACATTCTAATGAAGTCAACGCCATTAAATGGGATCCTTCGGGTA
CTTTACTTGCCTCGTGTTCAGATGACATGACTTTAAAGGTATGGTCAATGAACCAAGACA
ACTTCGTGCATGACTTGCGAGCGCACAGCAAGGAGATCTACACCATAAAATGGAGTCCTG
CTGGTCCAGGCTCTAACAATCCAAACCAAAATTTAATGCTAGCAAGTGCCTCATTTGATT
CAACTGTGCGACTATGGGAGCTGGAGAAAGGTGCTTGTCTCCACACCTTAACCAAACACC
ATGAGCCTGTGTATTCAGTAGCTTTTAGCCCGGACGGCAGACTACTTGCGAGCGGTTCAT
TCGATAAATGCGTCCACATTTGGAGTACGCAGACGGGAAGGTTGGTCCATAGTTACGAGG
GGACGGGTGGAATATTTGAAGTTTGTTGGAATTCAAGTGGAAACAAAGTTGGTGCAAGCG
CATCAGATGGAACGGTCTGCGTGCTTGATCTTCGCAAGTGAGACGACGAAGTATGAGCTC
CTTGGTGTCATCTAGCGGCTAAAAATCGCGGTCCAGATTTCGGTCAAAGCGGTGTACACG
ATGACGTAGCAACGAAGATTAATCGCGGCGTTCGCGACGAGGGGCGAACGGTTCGATTTA
AGCGAGAAGGTTATTGTTGTGCAACGACACGACGCGTTATATATTCTATTTTTACTGCTT
TCTTACGTCACAATTTATTTGTTGTGGTTTCGCCAATACAATTGAGCACCTA
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[184-552] 1.7E-160 |
| SMART |
WD40_repeat (IPR001680) - T[189-228] 6.7E-8 - T[246-291] 2.4E-4 - T[293-332] 3.5E-7 - T[335-373] 0.022 - T[376-415] 2.5E-11 - T[418-466] 1.3E-7 - T[469-508] 3.4E-12 - T[511-549] 0.015 |
| Pfam |
WD40_repeat (IPR001680) - T[193-228] 2.8E-5 - T[263-290] 9.0E-5 - T[298-332] 0.0012 - T[378-415] 7.2E-10 - T[421-465] 0.001 - T[470-508] 6.2E-10 - T[512-547] 0.066 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[194-230] 8.15E-8 - T[263-551] 9.34E-72 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[196-517] 52.835 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[196-237] 14.051 - T[266-290] 10.107 - T[300-341] 13.416 - T[383-424] 16.123 - T[425-475] 11.678 - T[476-517] 16.624 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[215-229] . - T[319-333] . - T[453-467] . |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[215-229] 1.0E-6 - T[402-416] 1.0E-6 - T[453-467] 1.0E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TBL1R_HUMAN | 62.929 % | 683 | 0 |
| TBL1X_HUMAN | 66.304 % | 741 | 0 |
| TBL1Y_HUMAN | 66 % | 729 | 0 |