Login
Help

TRANSCRIPT CARD

Submit your Data

  1. Transcript 'Phfumi.CG.MTP2014.S8...'
  2. Transcript 'Cisavi.CG.ENS81.R23....'
  3. Transcript 'Phfumi.CG.MTP2014.S8...'
  4. Molecular Tool 'Noggin overexpression'
  5. Transcript 'KH2012:KH.C4.140.v2....'

Transcript Model

Transcript Id

KH2012:KH.C4.140.v2.A.SL3-1

Possible name(s)

ARF1; ARF3; ARF6

Location

KhC4 [3,631,639 / 3,633,602]

Sequences

Amino acid sequence

Length: 174

>KH.C4.140.v2.A.SL3-1
KTTVLHRLKLSDCTRTLPTIGFNVETVTPCKGLTLTIWDIGGQDKIRQLWKHYYTSTEGL
IYVVDSADDTRFGEAASELNAILNEHNMVKIPLVVLANKQDLPGAVTSKEMEGILQLNEL
SPDYMWHVQECCASKGTGVFEAMSVLAKFIKKQKKESQPNARKDRNSSTTSLET

Nucleotide sequence

Length: 1,058

>KH2012:KH.C4.140.v2.A.SL3-1
GCAAAACAACGGTTCTCCACCGTTTAAAATTAAGTGATTGTACTAGGACGTTGCCGACGA
TCGGATTTAACGTAGAAACTGTCACACCATGTAAAGGTCTCACGTTGACGATATGGGATA
TCGGAGGTCAAGATAAAATCCGCCAGCTTTGGAAACATTATTACACTTCAACGGAAGGGC
TGATATACGTAGTGGATAGCGCTGACGACACTCGGTTTGGAGAAGCTGCCAGTGAACTCA
ATGCCATTCTTAATGAACATAATATGGTCAAGATACCACTCGTTGTACTGGCGAACAAGC
AAGATCTTCCAGGAGCGGTGACAAGCAAAGAAATGGAAGGAATACTTCAACTTAACGAAC
TGTCACCAGACTACATGTGGCATGTACAGGAGTGTTGTGCGTCCAAAGGAACCGGCGTGT
TCGAAGCGATGTCGGTGCTAGCTAAATTTATAAAGAAACAGAAGAAAGAAAGTCAACCGA
ATGCTAGGAAAGATAGGAACTCTAGTACTACGTCTCTTGAAACTTGAAAACTGTGTACAA
CCTTGCAGCGCCTTTTGCTGTACAGATTTCAAACCTATACTGTCAGTTTCTTTTTATTTC
TTCTGGCTTTTAACGTTTGTTCCTTTATTAATAGCTGTGAAAATACAGTGTGACCGCTAT
TTTATAAATGGCGAGTATACTGATGGATGCTTTTTGATTTTATCAAACCCCACTTGCGGT
GGGGTGTTTTAAACTCAAAACAGATGTGAATAAAACCTTTTTGTTTTATATCGGCACCAG
CAATGTATAATTAATCATTTGTATGAGAAAATATTTGCGGCAGGCATAGAAACCCCGAAA
ATAGAAGACGCCATCAACATTTGCAGATTCGACTGCTTTGAGTTGCGATCAATTCTTCTT
TTAACCTACACCTGTATAGACTAGTTTGTACTAGGAGGTTTGCAATTAATAATTATTCTT
CACTCTGCTTACATCTTATTCTGTACCGACCAAACATGTGTATTATGCATGGAAAACAGT
AAACTAGATTTTATCTATATATATTTTACAATACAAAG

InterProScan

TIGRFAM
Small_GTP-bd_dom (IPR005225) - T[1-119] 7.1E-16
ProSiteProfiles
Small_GTPase_ARF (IPR024156) - T[1-150] 17.724
Pfam
Small_GTPase_ARF/SAR (IPR006689) - T[1-148] 1.5E-53
SUPERFAMILY
P-loop_NTPase (IPR027417) - T[1-156] 2.01E-38
PRINTS
Small_GTPase_ARF/SAR (IPR006689) - T[46-71] 4.1E-10 - T[91-112] 4.1E-10

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
ARF1_HUMAN 47.403 % 149 3.07E-46
ARF3_HUMAN 48.052 % 149 2.32E-46
ARF6_HUMAN 49.315 % 150 6.8E-47