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TRANSCRIPT CARD

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  1. Molecular Tool 'ephrin-Ad-MO3 (Hitoyoshi's MO)'
  2. Transcript 'KH2012:KH.C3.7.v1.C....'

Transcript Model

Transcript Id

KH2012:KH.C3.7.v1.C.SL2-1

Possible name(s)

EDC4

Gene model

KH2012:KH.C3.7

Location

KhC3 [1,534,471 / 1,562,317]

Sequences

Amino acid sequence

Length: 1,393

>KH.C3.7.v1.C.SL2-1
NLTFYVKSAMEASNGLPIQNGHHELSNSLKEMLKINSSNTSTVQDAFDVSHDGSGDHRLH
ISSLSVSQAYAVDSDTISSTAEDKPQETDLQNIFLDKASDGECVSLHGPHTRIHASSASE
LESQASASNKVKINTITKFDWEHRYYAGNLLTVTDMYIAYCIKGRNGYSVRVINRNNSSD
RVLLKGFTGAVCDVGFAPHTGCNILAAVDSVGNLIVWSLEQEDGHLVEKKRIHLTATPGM
CEASQNHRVMWIPYIQRDEEEESSYGSKAETTESSPPKILVLVYSKVAEVWDLDIAFAVA
DALPENGATRLDLSHAYVSVTGESDADISDCELSPIGNVLAAASTDGFVKFWQVQIEEPQ
PPTCLHQWKPHDGKPVSCVKFCDNKKQPENSIFWRFLLTGCERNNELKIWCTVTWNCLQV
VDFFPSTPAHAVPELNLVLYLSADFLVLSDVHRKILYVMQCKTNIKDGTAQLSSIAHFQL
TSPLLSIAFVDARPCKFKALVDSSHDDHNKDQELSGSEDEDQHEDEDDDDEDGRIRSKSG
DSKSEGDVSNKLDGVLIKLITIQTRSLQSLDVRFISNDDSDIDENPRSLSTYNTISEDLK
DIVSLSSMEENFSHCGGEVGKSIDDGDFMAGGDAALAKFVESTQEKIMTDSEHQMSPDVV
EHHEIFQIDDNSLEDDEKVEIVVDDEEGAMKASPDITHSNNQPVLLTPDAFISSFKSPGT
VGDSANSSFTTVTPFSNHPVCDQQLNNFLIGGARGSLTNLMISSSSVASEKPPDVENSSI
PSSSPVLPRASSSPSAAPEVNFPPRSVKSPDLISSTSTQDGEGAKAPDPSSAVVIPKSLS
TVLSRSYSDSSAAVMVPSISEPFSQMLRPVTSTQWPKAPDVTMSRPVVVGSPPAAASGSV
DNWPPVEPMDRAIPHQIQPVEPDHQPTQSPQPSHNDDIIQLINNFKEEQKLMMINHQKEL
QSIIKKQNQLQKSSDASTKKTDNQVDKLDKAVRAVSENQKKLSTDFKLMQSGVTEATAGK
IDRIIKSEIKRTILPGMNQTLESVKGDLTNIVSQKLTATDVILRENIPKVLRSKDIVDHI
GTSTAKAIHSQVQGSLPEIFFTTLIPAFERSCQNMFQQLSTTYHRGMEETLLKLEKQMTV
RVKPDNDRLQTLIKDAYTAGTELQNASKLATSDIANVMKDIPNQIEKAFTRCEERLKEKQ
EETFAEQRRVITNLIRDVITRTVDEKLSQGGAEASVLGAAAVVGTSPHLMVNRPSILDQQ
QQILKMLQQGNVNTAFQTALTASDLNLVMYVCETVDPSVVFGVSPCPLQQPILLSLIQQL
SSDLGTKTDIKLKYLQEAVMNLDRRHQVTQEYMHSVLSALVQKLNKCLLEPLEKPSLSKD
LKMLAMAAQSLMK

Nucleotide sequence

Length: 4,764

>KH2012:KH.C3.7.v1.C.SL2-1
GATCTCCAGTAGAAATCTGACCCAAGGTTTATAACTACTTTTTAAGAAATTGAGGATTTT
GGTTTACAATACACATTGTAACTTCCCAGTATTACGATACAGTTTTAACAAATCTGGTTT
CAGTGAAATTTGACTTTTTATGTAAAATCAGCCATGGAAGCCTCCAACGGGTTGCCAATA
CAGAATGGACACCATGAGTTGTCTAATTCTCTCAAAGAAATGTTGAAGATAAACAGCTCG
AATACTTCAACTGTTCAAGATGCTTTTGATGTGAGTCATGATGGCTCAGGGGATCACAGA
CTTCATATAAGCTCTCTCTCTGTTTCTCAGGCCTATGCGGTGGATTCAGACACAATTTCA
TCAACTGCAGAAGATAAACCACAGGAAACAGATTTACAAAATATTTTTCTTGACAAAGCA
TCAGACGGAGAATGTGTTTCACTGCATGGACCACATACACGTATTCATGCAAGCTCTGCT
TCTGAATTGGAGAGCCAAGCTTCGGCCAGTAATAAGGTGAAAATCAACACTATAACTAAA
TTCGATTGGGAGCATCGCTATTATGCTGGGAACCTTCTCACCGTTACTGACATGTACATT
GCTTACTGTATAAAAGGCCGCAATGGCTATTCGGTTCGTGTCATCAATCGAAACAATTCT
TCGGATCGAGTTCTGTTGAAAGGTTTCACTGGAGCAGTGTGTGATGTTGGGTTCGCACCA
CACACAGGGTGTAATATCTTAGCTGCAGTGGATAGTGTTGGAAACCTCATTGTGTGGAGC
TTAGAACAGGAAGATGGACATCTTGTTGAAAAGAAAAGAATTCATCTCACAGCCACTCCT
GGGATGTGTGAGGCATCTCAGAATCATCGAGTGATGTGGATTCCTTACATCCAGCGAGAT
GAGGAGGAAGAATCATCATACGGTTCAAAAGCAGAGACCACAGAGTCCTCCCCTCCCAAA
ATTCTGGTTCTTGTGTATTCAAAAGTGGCCGAAGTATGGGATTTGGATATTGCGTTTGCT
GTGGCCGATGCTTTGCCAGAAAATGGGGCCACGAGGTTGGATTTATCTCATGCTTATGTA
TCTGTTACTGGCGAATCCGATGCAGATATCAGTGATTGTGAATTGTCACCAATTGGCAAT
GTGTTGGCTGCAGCAAGCACTGATGGGTTTGTCAAGTTCTGGCAAGTTCAAATAGAAGAA
CCACAGCCACCCACATGTCTTCACCAATGGAAACCTCATGATGGAAAGCCAGTATCTTGT
GTGAAGTTTTGTGATAATAAGAAACAGCCTGAAAACAGCATTTTCTGGAGATTTCTTTTA
ACCGGTTGCGAACGAAACAATGAACTTAAAATTTGGTGCACAGTCACTTGGAATTGTTTG
CAGGTTGTTGATTTTTTTCCATCCACCCCCGCACATGCTGTACCTGAACTAAACCTTGTG
TTGTATCTTTCTGCTGACTTTCTTGTTCTATCTGATGTACACAGGAAGATTTTGTATGTG
ATGCAATGTAAGACTAACATCAAAGATGGGACAGCTCAACTTTCATCTATCGCACATTTC
CAACTTACGTCACCATTACTCAGCATTGCCTTTGTTGATGCACGACCATGTAAATTCAAG
GCGCTGGTCGACAGTTCGCATGATGACCATAATAAGGATCAGGAGTTGAGTGGATCAGAA
GATGAGGATCAACATGAAGATGAAGATGATGATGATGAGGATGGTAGGATCAGATCAAAA
TCGGGTGATAGCAAGTCAGAGGGAGATGTCAGCAACAAACTGGATGGAGTGTTGATTAAA
CTCATAACAATACAAACCAGGAGTTTGCAATCACTTGACGTCCGATTTATTTCAAACGAC
GACTCGGACATCGACGAAAACCCCAGAAGCTTAAGCACTTACAACACAATATCAGAAGAT
TTAAAGGATATTGTCAGCTTGAGCAGCATGGAGGAAAATTTTTCCCATTGTGGTGGGGAG
GTTGGTAAGAGCATCGATGATGGGGATTTCATGGCAGGGGGGGATGCTGCTCTGGCAAAG
TTTGTGGAGTCTACACAAGAGAAAATCATGACTGATTCAGAACATCAGATGTCGCCAGAT
GTAGTTGAACATCATGAAATTTTCCAAATTGATGATAACTCCTTAGAAGATGATGAGAAA
GTTGAAATTGTTGTAGATGATGAGGAAGGAGCAATGAAAGCATCACCGGATATAACTCAT
TCAAACAACCAACCTGTTCTTCTCACACCCGATGCTTTCATCAGTTCATTTAAAAGTCCA
GGGACAGTTGGAGATTCAGCCAACAGCAGTTTTACAACAGTCACCCCATTCAGCAACCAC
CCTGTGTGTGATCAACAACTTAACAACTTCCTTATTGGTGGGGCAAGAGGTTCATTGACG
AATCTCATGATTAGTTCATCCAGTGTTGCAAGTGAAAAACCTCCGGATGTAGAGAATTCA
TCCATTCCTTCATCATCACCTGTGCTCCCTCGTGCATCTTCTTCACCCTCTGCTGCTCCG
GAAGTTAATTTTCCTCCAAGATCAGTAAAATCTCCAGACCTCATCTCCTCCACCTCAACT
CAGGATGGAGAAGGAGCAAAAGCCCCAGATCCTTCATCAGCTGTGGTCATCCCCAAGTCT
TTATCTACTGTCCTTAGCAGAAGTTACTCAGACTCCAGTGCAGCAGTAATGGTACCTTCT
ATATCTGAACCATTTTCTCAAATGCTGCGACCAGTGACGAGCACCCAGTGGCCCAAAGCA
CCAGACGTCACAATGTCCCGCCCAGTTGTAGTCGGTTCACCACCAGCAGCAGCAAGTGGT
TCCGTTGATAATTGGCCACCAGTAGAACCGATGGATCGAGCAATTCCTCACCAGATTCAA
CCAGTTGAACCGGATCACCAACCCACCCAATCACCCCAACCCTCCCACAATGATGACATT
ATTCAACTGATCAATAATTTTAAAGAAGAACAAAAGTTAATGATGATCAATCACCAGAAG
GAGCTACAGAGCATCATTAAGAAACAAAACCAACTTCAAAAATCAAGTGATGCTTCTACT
AAAAAAACTGATAATCAAGTTGACAAACTCGATAAGGCTGTCAGAGCAGTTTCAGAGAAT
CAGAAGAAATTATCGACTGATTTCAAGTTGATGCAGTCTGGTGTTACTGAAGCAACTGCT
GGAAAAATCGACCGTATAATTAAATCCGAAATTAAAAGAACAATCCTGCCTGGAATGAAC
CAAACATTGGAGTCGGTGAAGGGAGATTTAACAAACATTGTGAGTCAGAAACTCACAGCA
ACCGATGTGATTCTCAGAGAAAACATTCCAAAAGTTTTACGTTCTAAGGATATAGTCGAC
CACATTGGAACATCAACTGCCAAGGCCATTCACAGTCAAGTACAAGGTTCACTACCGGAG
ATATTTTTCACTACATTAATTCCAGCATTTGAAAGATCATGCCAGAACATGTTTCAACAA
CTAAGTACGACTTACCACAGGGGGATGGAAGAAACGTTATTAAAACTGGAGAAGCAGATG
ACGGTGCGTGTGAAGCCAGACAATGATAGATTGCAGACATTGATCAAGGATGCATACACT
GCTGGTACTGAATTGCAGAACGCATCGAAGTTAGCAACATCAGACATTGCCAACGTTATG
AAAGATATACCAAACCAAATTGAAAAAGCATTTACAAGATGTGAGGAACGCTTAAAAGAG
AAACAGGAGGAAACTTTCGCTGAACAACGTCGCGTCATCACCAACCTCATTCGTGATGTC
ATCACTCGTACTGTGGATGAGAAATTATCACAAGGTGGCGCTGAAGCTAGTGTTCTAGGA
GCGGCAGCAGTAGTTGGGACTTCCCCACATCTCATGGTTAATAGACCCAGTATATTAGAT
CAGCAGCAACAAATATTGAAGATGCTGCAACAAGGAAATGTTAATACAGCTTTCCAAACT
GCTCTTACTGCATCTGACCTTAACCTTGTCATGTATGTTTGTGAAACTGTTGACCCATCT
GTGGTGTTTGGAGTATCTCCTTGCCCCCTGCAACAACCCATACTGCTGTCTCTCATTCAA
CAACTTTCTAGTGACCTTGGTACCAAGACTGATATAAAACTGAAGTATTTACAAGAAGCT
GTGATGAACTTAGATCGGCGGCACCAGGTTACCCAAGAATACATGCACAGCGTACTAAGT
GCACTGGTTCAGAAACTAAACAAGTGTTTGCTGGAACCACTCGAAAAACCGAGCCTTTCA
AAAGATCTAAAGATGCTTGCAATGGCTGCACAATCTCTAATGAAATAAATAACACAAAAA
CTTTGTTACTTCACTTTATGCTGATAAAGATACAAACTTTATTCAATTCAATCTTTGCTG
CTGTTATTGTTTTCTGCAACATAAGAATCAACCGCCACAAGATCTTTTATCAGCTTCCCC
TAAAACAGGGGAGTGTTTTATCCATTTCGTTCGAAAATTTTCTGCACATGTGATGGCATA
ACATGCACAAACCAGAAAGAGAAGAACCACAATGTTCATCACTGTGTTGTGTATTAAAAC
AAACCAAGCAACATGACGCATGCGTGCCTTGATACTGGATTGTGCGATCACAGCATTCCT
ATTAACCAATAAAACGTTGCTTCCCTATTCGTTTATTTCGTGACGTAGTGTGTCCCTATT
TTATTTTTACCCTTCTTGCACGATTTTTCGTGCTCTTATTTTTTCGAGGTCTACATTCAT
TTTAAATAAACTTTGAATTTCAAA

InterProScan

Pfam
EDC4_WD40 (IPR032401) - T[128-463] 4.0E-93
SUPERFAMILY
WD40_repeat_dom_sf (IPR036322) - T[157-468] 3.05E-19
SMART
WD40_repeat (IPR001680) - T[177-218] 7.5 - T[314-353] 0.048 - T[361-411] 0.58
ProSiteProfiles
WD40_repeat (IPR001680) - T[321-355] 8.503

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
EDC4_HUMAN 38.277 % 325 1.43E-91