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  1. Transcript 'KH2012:KH.C3.602.v1....'

Transcript Model

Transcript Id

KH2012:KH.C3.602.v1.C.SL5-1

Possible name(s)

WDR45; WDR45B; WIPI1

Gene model

KH2012:KH.C3.602

Location

KhC3 [3,157,452 / 3,158,885]

Sequences

Amino acid sequence

Length: 344

>KH.C3.602.v1.C.SL5-1
MPFVVRHLHFNQDKSCFTCSMDDGFRVYNVEPLAEKCRIDADKVGSCSQAVMFYRSNLVA
VVGGGLRPKFPQNVVRIWDDKFKKFVIEYCFNSNVLNVHLFRDKLIVALSRMVYVFSFPN
KSEKLAEIETRPNPLGLCQVSPASDKQLMAIPGHKVGGLQLIDVTTVDKTGSSCPITINA
HQTDVACIALNHQGTIVATASEKGTLIRLFDTMSRQKLVELRRGSDQAVLHCINFSKDSS
YLCASSDKGTVHIFALKDTALNRRSAFAKAGKVGPFQQYTNSQWSFSNFTVPAECACMCA
FGRGNSVIAICIDGTYHKYVFTADGTCSRQAYDVYLEIGDEVDF

Nucleotide sequence

Length: 1,433

>KH2012:KH.C3.602.v1.C.SL5-1
GTATGCCTTTTGTTGTAAGGCATCTTCACTTTAACCAGGACAAAAGTTGCTTCACATGTT
CTATGGATGATGGGTTTCGTGTCTACAATGTTGAACCTTTAGCGGAGAAATGTCGTATAG
ATGCAGACAAAGTTGGGAGCTGCTCCCAAGCTGTTATGTTTTACAGGAGCAACTTGGTTG
CTGTTGTGGGGGGTGGATTGCGACCAAAGTTCCCACAGAATGTTGTTCGAATCTGGGACG
ACAAGTTTAAAAAGTTTGTGATCGAATATTGCTTCAACAGCAATGTCCTTAATGTTCATC
TCTTCAGAGACAAACTGATTGTTGCACTATCACGCATGGTGTATGTTTTCAGTTTTCCAA
ATAAATCTGAAAAACTTGCTGAGATCGAAACGCGACCTAATCCTTTAGGACTCTGCCAGG
TTAGCCCTGCATCTGACAAGCAACTGATGGCAATTCCAGGCCATAAGGTTGGAGGGTTAC
AGCTCATTGATGTAACTACTGTGGATAAGACAGGGTCCAGTTGCCCTATAACTATCAATG
CTCATCAAACAGATGTGGCATGTATCGCATTGAACCACCAAGGTACTATAGTGGCCACTG
CATCTGAAAAAGGGACTTTAATCAGATTATTTGACACAATGTCTCGGCAGAAGTTAGTTG
AACTAAGGCGTGGTTCAGACCAGGCAGTCCTGCACTGCATAAACTTCAGCAAAGATTCCT
CATATCTTTGTGCCTCAAGTGACAAGGGTACCGTCCACATATTTGCGTTAAAAGACACCG
CCTTGAACCGAAGGTCCGCTTTTGCTAAAGCAGGGAAAGTAGGGCCTTTCCAGCAATACA
CAAACTCCCAGTGGAGCTTCAGTAACTTTACAGTGCCTGCTGAATGTGCGTGTATGTGTG
CATTTGGGCGTGGTAACTCAGTCATTGCAATTTGCATTGATGGAACATACCATAAATATG
TTTTTACTGCCGACGGCACATGCTCAAGACAAGCATATGATGTCTATTTAGAAATAGGTG
ATGAAGTTGACTTTTAAATTGTAAATTATTTTGGCGAATACATTCAAATACCCGTCAATA
CAAACACCTGTAATCAAGTATTTCCATTTAAAGAGTAACTGTAAATTGAAACCTGCTGTG
ATGTATTTGTAAAATATGGAACAAATGTGCAATAACAATTCTTACTTTTTGCCATTACTT
CTATAGCCTCAGTAGTAGTATACTTGCTGCAAATTAAAGGAATTGTTTTAAATATTACTC
AACTTTTTTTCGCTGACACATGCTTACAACTGCAGTGTGTCATCATGTATTGTATGTACA
TGTGTAGCATTCTATCTTTGCTTTTCTTTGATACTGTAGTATTACTGTTCGCATTTCTGT
TGTTATTTGCTGGTGCTGACACGGAAAAAGAAATAAATCTGCAGTGTTATTAA

InterProScan

Gene3D
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[1-322] 7.9E-23
SUPERFAMILY
WD40_repeat_dom_sf (IPR036322) - T[4-317] 1.53E-27
SMART
WD40_repeat (IPR001680) - T[171-211] 0.0034 - T[214-255] 1.3
Pfam
WD40_repeat (IPR001680) - T[224-254] 0.0034

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
WIPI3_HUMAN 48.048 % 314 4.49E-106
WIPI4_HUMAN 59.375 % 436 8.36E-154
WIPI1_HUMAN 35.676 % 108 2.12E-26