Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C3.602.v1.C.SL4-1

Possible name(s)

WDR45; WDR45B; WIPI1

Gene model

KH2012:KH.C3.602

Location

KhC3 [3,157,452 / 3,158,866]

Sequences

Amino acid sequence

Length: 338

>KH.C3.602.v1.C.SL4-1
HLHFNQDKSCFTCSMDDGFRVYNVEPLAEKCRIDADKVGSCSQAVMFYRSNLVAVVGGGL
RPKFPQNVVRIWDDKFKKFVIEYCFNSNVLNVHLFRDKLIVALSRMVYVFSFPNKSEKLA
EIETRPNPLGLCQVSPASDKQLMAIPGHKVGGLQLIDVTTVDKTGSSCPITINAHQTDVA
CIALNHQGTIVATASEKGTLIRLFDTMSRQKLVELRRGSDQAVLHCINFSKDSSYLCASS
DKGTVHIFALKDTALNRRSAFAKAGKVGPFQQYTNSQWSFSNFTVPAECACMCAFGRGNS
VIAICIDGTYHKYVFTADGTCSRQAYDVYLEIGDEVDF

Nucleotide sequence

Length: 1,414

>KH2012:KH.C3.602.v1.C.SL4-1
GCATCTTCACTTTAACCAGGACAAAAGTTGCTTCACATGTTCTATGGATGATGGGTTTCG
TGTCTACAATGTTGAACCTTTAGCGGAGAAATGTCGTATAGATGCAGACAAAGTTGGGAG
CTGCTCCCAAGCTGTTATGTTTTACAGGAGCAACTTGGTTGCTGTTGTGGGGGGTGGATT
GCGACCAAAGTTCCCACAGAATGTTGTTCGAATCTGGGACGACAAGTTTAAAAAGTTTGT
GATCGAATATTGCTTCAACAGCAATGTCCTTAATGTTCATCTCTTCAGAGACAAACTGAT
TGTTGCACTATCACGCATGGTGTATGTTTTCAGTTTTCCAAATAAATCTGAAAAACTTGC
TGAGATCGAAACGCGACCTAATCCTTTAGGACTCTGCCAGGTTAGCCCTGCATCTGACAA
GCAACTGATGGCAATTCCAGGCCATAAGGTTGGAGGGTTACAGCTCATTGATGTAACTAC
TGTGGATAAGACAGGGTCCAGTTGCCCTATAACTATCAATGCTCATCAAACAGATGTGGC
ATGTATCGCATTGAACCACCAAGGTACTATAGTGGCCACTGCATCTGAAAAAGGGACTTT
AATCAGATTATTTGACACAATGTCTCGGCAGAAGTTAGTTGAACTAAGGCGTGGTTCAGA
CCAGGCAGTCCTGCACTGCATAAACTTCAGCAAAGATTCCTCATATCTTTGTGCCTCAAG
TGACAAGGGTACCGTCCACATATTTGCGTTAAAAGACACCGCCTTGAACCGAAGGTCCGC
TTTTGCTAAAGCAGGGAAAGTAGGGCCTTTCCAGCAATACACAAACTCCCAGTGGAGCTT
CAGTAACTTTACAGTGCCTGCTGAATGTGCGTGTATGTGTGCATTTGGGCGTGGTAACTC
AGTCATTGCAATTTGCATTGATGGAACATACCATAAATATGTTTTTACTGCCGACGGCAC
ATGCTCAAGACAAGCATATGATGTCTATTTAGAAATAGGTGATGAAGTTGACTTTTAAAT
TGTAAATTATTTTGGCGAATACATTCAAATACCCGTCAATACAAACACCTGTAATCAAGT
ATTTCCATTTAAAGAGTAACTGTAAATTGAAACCTGCTGTGATGTATTTGTAAAATATGG
AACAAATGTGCAATAACAATTCTTACTTTTTGCCATTACTTCTATAGCCTCAGTAGTAGT
ATACTTGCTGCAAATTAAAGGAATTGTTTTAAATATTACTCAACTTTTTTTCGCTGACAC
ATGCTTACAACTGCAGTGTGTCATCATGTATTGTATGTACATGTGTAGCATTCTATCTTT
GCTTTTCTTTGATACTGTAGTATTACTGTTCGCATTTCTGTTGTTATTTGCTGGTGCTGA
CACGGAAAAAGAAATAAATCTGCAGTGTTATTAA

InterProScan

Gene3D	WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[1-315] 1.7E-22
SUPERFAMILY	WD40_repeat_dom_sf (IPR036322) - T[3-252] 5.65E-27 - T[287-311] 5.65E-27
SMART	WD40_repeat (IPR001680) - T[165-205] 0.0034 - T[208-249] 1.3
Pfam	WD40_repeat (IPR001680) - T[218-248] 0.0034

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
WIPI3_HUMAN	48.048 %	313	4.05E-106
WIPI4_HUMAN	59.599 %	436	7.34E-154
WIPI1_HUMAN	35.676 %	108	2.09E-26