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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.L84.27.v1....'
  2. EST 'AHC0AAA232YE19_RM1'
  3. Transcript 'Cisavi.CG.ENS81.R9.2...'
  4. Molecular Tool 'citb094m11-MO (Hamada's MO)'
  5. Transcript 'KH2012:KH.C3.602.v1....'

Transcript Model

Transcript Id

KH2012:KH.C3.602.v1.C.SL2-1

Possible name(s)

WDR45; WDR45B; WIPI1

Location

KhC3 [3,157,452 / 3,158,961]

Sequences

Amino acid sequence

Length: 365

>KH.C3.602.v1.C.SL2-1
CQQQFKFILINICFIVSKTEGMPFVVRHLHFNQDKSCFTCSMDDGFRVYNVEPLAEKCRI
DADKVGSCSQAVMFYRSNLVAVVGGGLRPKFPQNVVRIWDDKFKKFVIEYCFNSNVLNVH
LFRDKLIVALSRMVYVFSFPNKSEKLAEIETRPNPLGLCQVSPASDKQLMAIPGHKVGGL
QLIDVTTVDKTGSSCPITINAHQTDVACIALNHQGTIVATASEKGTLIRLFDTMSRQKLV
ELRRGSDQAVLHCINFSKDSSYLCASSDKGTVHIFALKDTALNRRSAFAKAGKVGPFQQY
TNSQWSFSNFTVPAECACMCAFGRGNSVIAICIDGTYHKYVFTADGTCSRQAYDVYLEIG
DEVDF

Nucleotide sequence

Length: 1,509

>KH2012:KH.C3.602.v1.C.SL2-1
TACTGAGTAGCTTGATGTCAGCAGCAGTTTAAGTTTATATTAATAAATATCTGCTTTATT
GTATCCAAAACTGAAGGTATGCCTTTTGTTGTAAGGCATCTTCACTTTAACCAGGACAAA
AGTTGCTTCACATGTTCTATGGATGATGGGTTTCGTGTCTACAATGTTGAACCTTTAGCG
GAGAAATGTCGTATAGATGCAGACAAAGTTGGGAGCTGCTCCCAAGCTGTTATGTTTTAC
AGGAGCAACTTGGTTGCTGTTGTGGGGGGTGGATTGCGACCAAAGTTCCCACAGAATGTT
GTTCGAATCTGGGACGACAAGTTTAAAAAGTTTGTGATCGAATATTGCTTCAACAGCAAT
GTCCTTAATGTTCATCTCTTCAGAGACAAACTGATTGTTGCACTATCACGCATGGTGTAT
GTTTTCAGTTTTCCAAATAAATCTGAAAAACTTGCTGAGATCGAAACGCGACCTAATCCT
TTAGGACTCTGCCAGGTTAGCCCTGCATCTGACAAGCAACTGATGGCAATTCCAGGCCAT
AAGGTTGGAGGGTTACAGCTCATTGATGTAACTACTGTGGATAAGACAGGGTCCAGTTGC
CCTATAACTATCAATGCTCATCAAACAGATGTGGCATGTATCGCATTGAACCACCAAGGT
ACTATAGTGGCCACTGCATCTGAAAAAGGGACTTTAATCAGATTATTTGACACAATGTCT
CGGCAGAAGTTAGTTGAACTAAGGCGTGGTTCAGACCAGGCAGTCCTGCACTGCATAAAC
TTCAGCAAAGATTCCTCATATCTTTGTGCCTCAAGTGACAAGGGTACCGTCCACATATTT
GCGTTAAAAGACACCGCCTTGAACCGAAGGTCCGCTTTTGCTAAAGCAGGGAAAGTAGGG
CCTTTCCAGCAATACACAAACTCCCAGTGGAGCTTCAGTAACTTTACAGTGCCTGCTGAA
TGTGCGTGTATGTGTGCATTTGGGCGTGGTAACTCAGTCATTGCAATTTGCATTGATGGA
ACATACCATAAATATGTTTTTACTGCCGACGGCACATGCTCAAGACAAGCATATGATGTC
TATTTAGAAATAGGTGATGAAGTTGACTTTTAAATTGTAAATTATTTTGGCGAATACATT
CAAATACCCGTCAATACAAACACCTGTAATCAAGTATTTCCATTTAAAGAGTAACTGTAA
ATTGAAACCTGCTGTGATGTATTTGTAAAATATGGAACAAATGTGCAATAACAATTCTTA
CTTTTTGCCATTACTTCTATAGCCTCAGTAGTAGTATACTTGCTGCAAATTAAAGGAATT
GTTTTAAATATTACTCAACTTTTTTTCGCTGACACATGCTTACAACTGCAGTGTGTCATC
ATGTATTGTATGTACATGTGTAGCATTCTATCTTTGCTTTTCTTTGATACTGTAGTATTA
CTGTTCGCATTTCTGTTGTTATTTGCTGGTGCTGACACGGAAAAAGAAATAAATCTGCAG
TGTTATTAA

InterProScan

SMART
WD40_repeat (IPR001680) - T[9-50] 260.0 - T[192-232] 0.0034 - T[235-276] 1.3
Gene3D
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[19-309] 6.3E-23
SUPERFAMILY
WD40_repeat_dom_sf (IPR036322) - T[21-338] 6.72E-28
Pfam
WD40_repeat (IPR001680) - T[245-275] 0.0037

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
WIPI3_HUMAN 48.048 % 313 1.41E-105
WIPI4_HUMAN 59.375 % 436 1.38E-153
WIPI1_HUMAN 35.676 % 108 4.17E-26