Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C3.602.v1.C.SL1-1

Possible name(s)

WDR45; WDR45B; WIPI1

Gene model

KH2012:KH.C3.602

Location

KhC3 [3,157,452 / 3,158,988]

Sequences

Amino acid sequence

Length: 365

>KH.C3.602.v1.C.SL1-1
CQQQFKFILINICFIVSKTEGMPFVVRHLHFNQDKSCFTCSMDDGFRVYNVEPLAEKCRI
DADKVGSCSQAVMFYRSNLVAVVGGGLRPKFPQNVVRIWDDKFKKFVIEYCFNSNVLNVH
LFRDKLIVALSRMVYVFSFPNKSEKLAEIETRPNPLGLCQVSPASDKQLMAIPGHKVGGL
QLIDVTTVDKTGSSCPITINAHQTDVACIALNHQGTIVATASEKGTLIRLFDTMSRQKLV
ELRRGSDQAVLHCINFSKDSSYLCASSDKGTVHIFALKDTALNRRSAFAKAGKVGPFQQY
TNSQWSFSNFTVPAECACMCAFGRGNSVIAICIDGTYHKYVFTADGTCSRQAYDVYLEIG
DEVDF

Nucleotide sequence

Length: 1,536

>KH2012:KH.C3.602.v1.C.SL1-1
AGAACTGTTACTACAATTTCACCACAGTACTGAGTAGCTTGATGTCAGCAGCAGTTTAAG
TTTATATTAATAAATATCTGCTTTATTGTATCCAAAACTGAAGGTATGCCTTTTGTTGTA
AGGCATCTTCACTTTAACCAGGACAAAAGTTGCTTCACATGTTCTATGGATGATGGGTTT
CGTGTCTACAATGTTGAACCTTTAGCGGAGAAATGTCGTATAGATGCAGACAAAGTTGGG
AGCTGCTCCCAAGCTGTTATGTTTTACAGGAGCAACTTGGTTGCTGTTGTGGGGGGTGGA
TTGCGACCAAAGTTCCCACAGAATGTTGTTCGAATCTGGGACGACAAGTTTAAAAAGTTT
GTGATCGAATATTGCTTCAACAGCAATGTCCTTAATGTTCATCTCTTCAGAGACAAACTG
ATTGTTGCACTATCACGCATGGTGTATGTTTTCAGTTTTCCAAATAAATCTGAAAAACTT
GCTGAGATCGAAACGCGACCTAATCCTTTAGGACTCTGCCAGGTTAGCCCTGCATCTGAC
AAGCAACTGATGGCAATTCCAGGCCATAAGGTTGGAGGGTTACAGCTCATTGATGTAACT
ACTGTGGATAAGACAGGGTCCAGTTGCCCTATAACTATCAATGCTCATCAAACAGATGTG
GCATGTATCGCATTGAACCACCAAGGTACTATAGTGGCCACTGCATCTGAAAAAGGGACT
TTAATCAGATTATTTGACACAATGTCTCGGCAGAAGTTAGTTGAACTAAGGCGTGGTTCA
GACCAGGCAGTCCTGCACTGCATAAACTTCAGCAAAGATTCCTCATATCTTTGTGCCTCA
AGTGACAAGGGTACCGTCCACATATTTGCGTTAAAAGACACCGCCTTGAACCGAAGGTCC
GCTTTTGCTAAAGCAGGGAAAGTAGGGCCTTTCCAGCAATACACAAACTCCCAGTGGAGC
TTCAGTAACTTTACAGTGCCTGCTGAATGTGCGTGTATGTGTGCATTTGGGCGTGGTAAC
TCAGTCATTGCAATTTGCATTGATGGAACATACCATAAATATGTTTTTACTGCCGACGGC
ACATGCTCAAGACAAGCATATGATGTCTATTTAGAAATAGGTGATGAAGTTGACTTTTAA
ATTGTAAATTATTTTGGCGAATACATTCAAATACCCGTCAATACAAACACCTGTAATCAA
GTATTTCCATTTAAAGAGTAACTGTAAATTGAAACCTGCTGTGATGTATTTGTAAAATAT
GGAACAAATGTGCAATAACAATTCTTACTTTTTGCCATTACTTCTATAGCCTCAGTAGTA
GTATACTTGCTGCAAATTAAAGGAATTGTTTTAAATATTACTCAACTTTTTTTCGCTGAC
ACATGCTTACAACTGCAGTGTGTCATCATGTATTGTATGTACATGTGTAGCATTCTATCT
TTGCTTTTCTTTGATACTGTAGTATTACTGTTCGCATTTCTGTTGTTATTTGCTGGTGCT
GACACGGAAAAAGAAATAAATCTGCAGTGTTATTAA

InterProScan

SMART	WD40_repeat (IPR001680) - T[9-50] 260.0 - T[192-232] 0.0034 - T[235-276] 1.3
Gene3D	WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[19-309] 6.3E-23
SUPERFAMILY	WD40_repeat_dom_sf (IPR036322) - T[21-338] 6.72E-28
Pfam	WD40_repeat (IPR001680) - T[245-275] 0.0037

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
WIPI3_HUMAN	48.048 %	313	1.41E-105
WIPI4_HUMAN	59.375 %	436	1.38E-153
WIPI1_HUMAN	35.676 %	108	4.17E-26