- Transcript 'KH2012:KH.C3.557.v2....'
Transcript Model
Transcript Id
KH2012:KH.C3.557.v2.B.nonSL8-2
Possible name(s)
MID1; TRIM36; TRIM46
Gene model
Location
KhC3 [3,693,797 / 3,703,529]
Amino acid sequence
Length: 897
>KH.C3.557.v2.B.nonSL8-2
EVRMLGALKVWASGQKSSKYSPRNKRKSRPGSRPSSPVPLTCEPQESDVDNTEMVNYGHL
LTCPLCDELFTHPVLLPCQHSLCYGCARAQILSDDAMMTSMIEEIADEDSAIEMSAVTSP
TYTSSFTSSPPRSVTRKNSDPEFDLSPQSSNSRQSGFPDLENEDPQLMERESGNNNGGNK
QSIVLTTKDLLHFKSSARDRTSSTRSLKSGHSTPRSGSFIESDGQRPGFKKFFSPASSGK
NSLMTSSITSSSSSLRSMSKRPSLRRSSSTSSIARAASMRSHSQHHNALATLKKSRVKSI
FCPSCEQQVQLGKLGISGLFRNFALETIVERFRSAAKAAVAIRCGYCKPPAADATKSCID
CKLSYCNECFKAVHIWGTKKAQHDYVGPTNNFSRPKVLLCPEHNKEAVNMYCSKCKKSVC
RMCKLGGGGHVNHPVLSAKSAYKEGKERLCEGLAVLKSKKASVQAKIDSLGEAFTALERQ
EAATREEIHTSIDEMHRLLEVKRNDLLTKADSKLREKEQLLRQEILDHHRHMMYASVVSF
AEETLKETDPAYFLQTVQMVEIKVNEAIDHLSKEGREGLGESATLHLELAETKKKMEEID
FVAAPKQPKIEGQFDGDVASQPIISWEPGSLNEVIEKFEIRYTPHCDVTDDVGKQNSSTI
CVDSVKPFFEIPEEAPATLYDVTIRSVNKAGCSEWSEPVLMHRSATKVTQFKLVSDDNDV
TVDSDGRRANIRVASGSNRFRVLHGDSPFWSGEQYWEVVVTSSYARHVIVGVNELCPTTS
GHLLHGTIHFKDDGGANGALLHVVCATANLVSRPCFGGNWSNLLDSDVTNSSSIGEHRFV
AGIHLRVSAGNEATVHFYDVTMGNNGDRKFLFRKNFRFTPPLWPLVAVEGSAKVLIK
Nucleotide sequence
Length: 3,134
>KH2012:KH.C3.557.v2.B.nonSL8-2
GCTTTTCATTTGTACAGTGTTAGGAGGTTAGAATGTTGGGCGCTTTGAAAGTTTGGGCCA
GTGGCCAGAAATCAAGCAAGTATTCACCGAGAAACAAACGTAAGAGTCGACCTGGGAGCA
GACCAAGTTCTCCTGTTCCTTTAACATGTGAACCTCAGGAAAGTGACGTCGATAACACAG
AGATGGTTAACTACGGTCATCTGCTGACGTGTCCACTATGCGATGAGCTGTTCACACACC
CCGTGCTACTACCATGCCAGCATAGTTTATGCTACGGTTGCGCACGAGCTCAAATACTCA
GCGATGACGCAATGATGACGTCAATGATCGAAGAGATTGCTGACGAGGACAGCGCCATTG
AGATGTCTGCTGTGACGTCACCAACTTACACGTCATCGTTTACGTCATCGCCACCTCGAA
GTGTTACAAGAAAAAACTCGGATCCAGAATTCGATTTATCTCCACAATCGTCGAATTCGC
GACAATCTGGATTTCCGGATTTAGAGAACGAAGATCCGCAATTAATGGAAAGGGAAAGCG
GAAATAACAATGGAGGCAACAAACAGTCTATTGTTCTAACAACAAAGGATCTTCTACATT
TTAAGTCCTCCGCCCGGGATCGAACCTCCTCTACTCGAAGCCTTAAGTCCGGACACTCGA
CACCGAGAAGCGGTAGCTTCATCGAGAGCGATGGTCAGAGGCCCGGTTTCAAAAAGTTCT
TCTCGCCAGCTTCATCCGGAAAAAATAGTCTGATGACGTCATCAATTACGTCATCGTCGT
CGTCTCTGAGAAGCATGTCGAAAAGACCAAGTCTTCGCCGAAGTAGCTCAACTTCATCTA
TCGCAAGAGCGGCATCTATGCGCAGTCACTCACAACATCATAACGCTCTCGCAACTTTGA
AAAAAAGCCGAGTGAAAAGTATATTTTGCCCAAGTTGTGAGCAACAGGTTCAACTTGGGA
AACTTGGAATATCTGGTTTGTTCAGAAATTTTGCTTTGGAAACCATAGTTGAAAGATTTC
GATCAGCGGCAAAAGCAGCGGTCGCCATAAGATGCGGTTATTGTAAACCTCCTGCAGCTG
ACGCTACCAAATCATGCATAGACTGCAAGCTGAGTTATTGCAACGAATGTTTCAAAGCAG
TTCACATATGGGGGACAAAGAAAGCGCAACATGATTACGTGGGACCAACCAACAATTTTT
CCCGACCTAAGGTTCTGCTGTGTCCTGAGCACAATAAGGAAGCTGTGAACATGTATTGTA
GTAAATGCAAGAAGTCTGTGTGCAGAATGTGCAAGCTTGGTGGTGGTGGACACGTCAATC
ATCCTGTGTTATCCGCAAAATCAGCGTACAAGGAGGGAAAGGAACGTCTATGCGAAGGAC
TTGCCGTTTTGAAAAGCAAGAAAGCTTCCGTTCAAGCCAAGATCGATTCGCTGGGCGAAG
CTTTCACTGCACTTGAGCGACAAGAAGCTGCTACACGCGAAGAAATCCACACATCTATAG
ACGAGATGCATCGCTTGCTTGAGGTGAAGAGAAACGACCTTCTCACTAAAGCTGACTCTA
AACTGCGCGAAAAAGAACAACTTCTAAGGCAAGAAATACTGGATCACCACAGACACATGA
TGTACGCTAGCGTCGTCTCCTTCGCAGAGGAAACTCTTAAAGAAACTGACCCGGCTTACT
TCCTACAAACTGTACAGATGGTTGAGATAAAGGTAAACGAAGCAATTGATCATTTATCAA
AAGAAGGAAGAGAGGGACTTGGAGAGTCCGCGACTCTACATCTGGAGTTGGCGGAGACAA
AGAAGAAAATGGAAGAAATAGATTTCGTAGCAGCTCCTAAGCAGCCGAAGATCGAAGGAC
AATTTGATGGAGATGTCGCTTCTCAGCCAATCATATCATGGGAACCCGGGTCATTAAACG
AGGTCATAGAAAAGTTCGAAATTCGATACACCCCGCATTGTGACGTAACCGATGACGTAG
GGAAGCAAAACTCAAGCACGATATGTGTGGATTCGGTGAAACCATTTTTTGAGATACCAG
AAGAAGCGCCCGCGACTCTGTATGACGTCACAATACGCTCTGTGAACAAAGCAGGGTGCA
GTGAATGGAGTGAACCAGTGTTGATGCACAGATCAGCAACGAAAGTTACCCAATTCAAGC
TGGTATCGGATGATAATGACGTTACAGTCGACAGTGACGGTCGCCGAGCGAATATTCGAG
TCGCATCTGGTTCCAACCGGTTTCGCGTGCTACACGGAGATTCTCCGTTTTGGAGCGGCG
AGCAGTATTGGGAAGTCGTTGTGACGTCATCATACGCCCGCCACGTCATCGTTGGGGTGA
ATGAACTTTGCCCCACTACTTCAGGCCACCTATTGCATGGTACCATACACTTCAAAGACG
ACGGAGGAGCAAATGGAGCGCTGTTGCACGTAGTTTGCGCTACAGCGAACTTGGTCAGTC
GGCCATGTTTTGGCGGGAACTGGTCAAACCTTTTGGATTCTGACGTCACCAATTCGTCAT
CGATTGGCGAGCACCGTTTCGTTGCTGGGATTCATCTTCGAGTTTCCGCTGGTAACGAAG
CGACTGTTCACTTCTATGACGTCACTATGGGAAACAATGGCGACCGAAAATTCTTGTTTC
GGAAAAACTTTCGTTTCACCCCTCCATTATGGCCGCTGGTAGCAGTAGAGGGCAGCGCTA
AAGTATTAATAAAATGACTGTAAATTAAAATATAAGAAACAATGAGTGTGTATATTTCAC
TGCCACTTGTACATATAAGCACATCTATATTCAGTAGTTCATATTTCTTTCCCGTTTGCG
TTAAATTCCTACTATTGTTTATCTCCCGCGCTCAGAAAATTATCTAGTTCTGTACGCGTG
ATAAATTGTTTAGCAGAACTGCTAGATTCACTGCTATGCCCGTTAGGTCTAACAATTTGC
ACCCCTGTTTATTGATTGGCGTTTATTGCGTTGTGCTTGCCAAGTTTATATACCTTGCAA
ACTGTGGTGACAGTATATATCACTTCAATCATTGTGAAACGTCTGCTGTATTTTGCCACC
GTAGTATTCAAGCCTGGTGTGTGGTAAACTATGTTTTCTTTATTTTTGTTCAAAATAAAA
CCAAAACAATCATA
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[58-121] 3.5E-9 |
| SMART |
Znf_RING (IPR001841) - T[63-305] 3.7E-4 |
| Pfam |
Znf-RING_LisH (IPR027370) - T[63-88] 1.3E-6 |
| SMART |
Znf_B-box (IPR000315) - T[395-438] 4.1E-4 |
| ProSiteProfiles |
Znf_B-box (IPR000315) - T[395-438] 11.092 |
| Pfam |
Znf_B-box (IPR000315) - T[397-436] 2.3E-6 |
| CDD |
Znf_B-box (IPR000315) - T[399-436] 6.68032E-6 |
| ProSiteProfiles |
COS_domain (IPR017903) - T[545-602] 8.852 |
| Gene3D |
Ig-like_fold (IPR013783) - T[604-706] 5.8E-8 |
| ProSiteProfiles |
FN3_dom (IPR003961) - T[604-709] 12.395 |
| SUPERFAMILY |
FN3_sf (IPR036116) - T[623-700] 3.69E-9 |
| CDD |
FN3_dom (IPR003961) - T[624-699] 2.20124E-5 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TRI18_HUMAN | 27.821 % | 149 | 2.01E-37 |
| TRI36_HUMAN | 33.602 % | 257 | 3.74E-74 |
| TRI46_HUMAN | 31.727 % | 226 | 1.12E-62 |