- Transcript 'KH2012:KH.C3.557.v2....'
Transcript Model
Transcript Id
KH2012:KH.C3.557.v2.B.nonSL5-2
Possible name(s)
MID1; TRIM36; TRIM46
Gene model
Location
KhC3 [3,693,865 / 3,703,529]
Amino acid sequence
Length: 882
>KH.C3.557.v2.B.nonSL5-2
KSSKYSPRNKRKSRPGSRPSSPVPLTCEPQESDVDNTEMVNYGHLLTCPLCDELFTHPVL
LPCQHSLCYGCARAQILSDDAMMTSMIEEIADEDSAIEMSAVTSPTYTSSFTSSPPRSVT
RKNSDPEFDLSPQSSNSRQSGFPDLENEDPQLMERESGNNNGGNKQSIVLTTKDLLHFKS
SARDRTSSTRSLKSGHSTPRSGSFIESDGQRPGFKKFFSPASSGKNSLMTSSITSSSSSL
RSMSKRPSLRRSSSTSSIARAASMRSHSQHHNALATLKKSRVKSIFCPSCEQQVQLGKLG
ISGLFRNFALETIVERFRSAAKAAVAIRCGYCKPPAADATKSCIDCKLSYCNECFKAVHI
WGTKKAQHDYVGPTNNFSRPKVLLCPEHNKEAVNMYCSKCKKSVCRMCKLGGGGHVNHPV
LSAKSAYKEGKERLCEGLAVLKSKKASVQAKIDSLGEAFTALERQEAATREEIHTSIDEM
HRLLEVKRNDLLTKADSKLREKEQLLRQEILDHHRHMMYASVVSFAEETLKETDPAYFLQ
TVQMVEIKVNEAIDHLSKEGREGLGESATLHLELAETKKKMEEIDFVAAPKQPKIEGQFD
GDVASQPIISWEPGSLNEVIEKFEIRYTPHCDVTDDVGKQNSSTICVDSVKPFFEIPEEA
PATLYDVTIRSVNKAGCSEWSEPVLMHRSATKVTQFKLVSDDNDVTVDSDGRRANIRVAS
GSNRFRVLHGDSPFWSGEQYWEVVVTSSYARHVIVGVNELCPTTSGHLLHGTIHFKDDGG
ANGALLHVVCATANLVSRPCFGGNWSNLLDSDVTNSSSIGEHRFVAGIHLRVSAGNEATV
HFYDVTMGNNGDRKFLFRKNFRFTPPLWPLVAVEGSAKVLIK
Nucleotide sequence
Length: 3,066
>KH2012:KH.C3.557.v2.B.nonSL5-2
AAATCAAGCAAGTATTCACCGAGAAACAAACGTAAGAGTCGACCTGGGAGCAGACCAAGT
TCTCCTGTTCCTTTAACATGTGAACCTCAGGAAAGTGACGTCGATAACACAGAGATGGTT
AACTACGGTCATCTGCTGACGTGTCCACTATGCGATGAGCTGTTCACACACCCCGTGCTA
CTACCATGCCAGCATAGTTTATGCTACGGTTGCGCACGAGCTCAAATACTCAGCGATGAC
GCAATGATGACGTCAATGATCGAAGAGATTGCTGACGAGGACAGCGCCATTGAGATGTCT
GCTGTGACGTCACCAACTTACACGTCATCGTTTACGTCATCGCCACCTCGAAGTGTTACA
AGAAAAAACTCGGATCCAGAATTCGATTTATCTCCACAATCGTCGAATTCGCGACAATCT
GGATTTCCGGATTTAGAGAACGAAGATCCGCAATTAATGGAAAGGGAAAGCGGAAATAAC
AATGGAGGCAACAAACAGTCTATTGTTCTAACAACAAAGGATCTTCTACATTTTAAGTCC
TCCGCCCGGGATCGAACCTCCTCTACTCGAAGCCTTAAGTCCGGACACTCGACACCGAGA
AGCGGTAGCTTCATCGAGAGCGATGGTCAGAGGCCCGGTTTCAAAAAGTTCTTCTCGCCA
GCTTCATCCGGAAAAAATAGTCTGATGACGTCATCAATTACGTCATCGTCGTCGTCTCTG
AGAAGCATGTCGAAAAGACCAAGTCTTCGCCGAAGTAGCTCAACTTCATCTATCGCAAGA
GCGGCATCTATGCGCAGTCACTCACAACATCATAACGCTCTCGCAACTTTGAAAAAAAGC
CGAGTGAAAAGTATATTTTGCCCAAGTTGTGAGCAACAGGTTCAACTTGGGAAACTTGGA
ATATCTGGTTTGTTCAGAAATTTTGCTTTGGAAACCATAGTTGAAAGATTTCGATCAGCG
GCAAAAGCAGCGGTCGCCATAAGATGCGGTTATTGTAAACCTCCTGCAGCTGACGCTACC
AAATCATGCATAGACTGCAAGCTGAGTTATTGCAACGAATGTTTCAAAGCAGTTCACATA
TGGGGGACAAAGAAAGCGCAACATGATTACGTGGGACCAACCAACAATTTTTCCCGACCT
AAGGTTCTGCTGTGTCCTGAGCACAATAAGGAAGCTGTGAACATGTATTGTAGTAAATGC
AAGAAGTCTGTGTGCAGAATGTGCAAGCTTGGTGGTGGTGGACACGTCAATCATCCTGTG
TTATCCGCAAAATCAGCGTACAAGGAGGGAAAGGAACGTCTATGCGAAGGACTTGCCGTT
TTGAAAAGCAAGAAAGCTTCCGTTCAAGCCAAGATCGATTCGCTGGGCGAAGCTTTCACT
GCACTTGAGCGACAAGAAGCTGCTACACGCGAAGAAATCCACACATCTATAGACGAGATG
CATCGCTTGCTTGAGGTGAAGAGAAACGACCTTCTCACTAAAGCTGACTCTAAACTGCGC
GAAAAAGAACAACTTCTAAGGCAAGAAATACTGGATCACCACAGACACATGATGTACGCT
AGCGTCGTCTCCTTCGCAGAGGAAACTCTTAAAGAAACTGACCCGGCTTACTTCCTACAA
ACTGTACAGATGGTTGAGATAAAGGTAAACGAAGCAATTGATCATTTATCAAAAGAAGGA
AGAGAGGGACTTGGAGAGTCCGCGACTCTACATCTGGAGTTGGCGGAGACAAAGAAGAAA
ATGGAAGAAATAGATTTCGTAGCAGCTCCTAAGCAGCCGAAGATCGAAGGACAATTTGAT
GGAGATGTCGCTTCTCAGCCAATCATATCATGGGAACCCGGGTCATTAAACGAGGTCATA
GAAAAGTTCGAAATTCGATACACCCCGCATTGTGACGTAACCGATGACGTAGGGAAGCAA
AACTCAAGCACGATATGTGTGGATTCGGTGAAACCATTTTTTGAGATACCAGAAGAAGCG
CCCGCGACTCTGTATGACGTCACAATACGCTCTGTGAACAAAGCAGGGTGCAGTGAATGG
AGTGAACCAGTGTTGATGCACAGATCAGCAACGAAAGTTACCCAATTCAAGCTGGTATCG
GATGATAATGACGTTACAGTCGACAGTGACGGTCGCCGAGCGAATATTCGAGTCGCATCT
GGTTCCAACCGGTTTCGCGTGCTACACGGAGATTCTCCGTTTTGGAGCGGCGAGCAGTAT
TGGGAAGTCGTTGTGACGTCATCATACGCCCGCCACGTCATCGTTGGGGTGAATGAACTT
TGCCCCACTACTTCAGGCCACCTATTGCATGGTACCATACACTTCAAAGACGACGGAGGA
GCAAATGGAGCGCTGTTGCACGTAGTTTGCGCTACAGCGAACTTGGTCAGTCGGCCATGT
TTTGGCGGGAACTGGTCAAACCTTTTGGATTCTGACGTCACCAATTCGTCATCGATTGGC
GAGCACCGTTTCGTTGCTGGGATTCATCTTCGAGTTTCCGCTGGTAACGAAGCGACTGTT
CACTTCTATGACGTCACTATGGGAAACAATGGCGACCGAAAATTCTTGTTTCGGAAAAAC
TTTCGTTTCACCCCTCCATTATGGCCGCTGGTAGCAGTAGAGGGCAGCGCTAAAGTATTA
ATAAAATGACTGTAAATTAAAATATAAGAAACAATGAGTGTGTATATTTCACTGCCACTT
GTACATATAAGCACATCTATATTCAGTAGTTCATATTTCTTTCCCGTTTGCGTTAAATTC
CTACTATTGTTTATCTCCCGCGCTCAGAAAATTATCTAGTTCTGTACGCGTGATAAATTG
TTTAGCAGAACTGCTAGATTCACTGCTATGCCCGTTAGGTCTAACAATTTGCACCCCTGT
TTATTGATTGGCGTTTATTGCGTTGTGCTTGCCAAGTTTATATACCTTGCAAACTGTGGT
GACAGTATATATCACTTCAATCATTGTGAAACGTCTGCTGTATTTTGCCACCGTAGTATT
CAAGCCTGGTGTGTGGTAAACTATGTTTTCTTTATTTTTGTTCAAAATAAAACCAAAACA
ATCATA
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[43-106] 3.4E-9 |
| Pfam |
Znf-RING_LisH (IPR027370) - T[48-73] 1.3E-6 |
| SMART |
Znf_RING (IPR001841) - T[48-290] 3.7E-4 |
| ProSiteProfiles |
Znf_B-box (IPR000315) - T[380-423] 11.092 |
| SMART |
Znf_B-box (IPR000315) - T[380-423] 4.1E-4 |
| Pfam |
Znf_B-box (IPR000315) - T[382-421] 2.3E-6 |
| CDD |
Znf_B-box (IPR000315) - T[384-421] 7.68696E-6 |
| ProSiteProfiles |
COS_domain (IPR017903) - T[530-587] 8.852 |
| Gene3D |
Ig-like_fold (IPR013783) - T[589-691] 5.7E-8 |
| ProSiteProfiles |
FN3_dom (IPR003961) - T[589-694] 12.395 |
| SUPERFAMILY |
FN3_sf (IPR036116) - T[608-685] 3.69E-9 |
| CDD |
FN3_dom (IPR003961) - T[609-684] 2.16266E-5 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TRI18_HUMAN | 27.821 % | 149 | 2.07E-37 |
| TRI36_HUMAN | 33.602 % | 258 | 2.71E-74 |
| TRI46_HUMAN | 31.727 % | 226 | 7.81E-63 |