- Transcript 'KH2012:KH.C14.171.v1...' >
- Transcript 'KH2012:KH.C3.557.v1....'
Transcript Model
Transcript Id
KH2012:KH.C3.557.v1.R.SL1-1
Possible name(s)
MID1; TRIM36; TRIM46
Gene model
Location
KhC3 [3,693,814 / 3,699,292]
Amino acid sequence
Length: 443
>KH.C3.557.v1.R.SL1-1
EVRMLGALKVWASGQKSSKYSPRNKRKSRPGSRPSSPVPLTCEPQESDVDNTEMVNYGHL
LTCPLCDELFTHPVLLPCQHSLCYGCARAQILSDDAMMTSMIEEIADEDSAIEMSAVTSP
TYTSSFTSSPPRSVTRKNSDPEFDLSPQSSNSRQSGFPDLENEDPQLMERESGNNNGGNK
QSIVLTTKDLLHFKSSARDRTSSTRSLKSGHSTPRSGSFIESDGQRPGFKKFFSPASSGK
NSLMTSSITSSSSSLRSMSKRPSLRRSSSTSSIARAASMRSHSQHHNALATLKKSRVKSI
FCPSCEQQVQLGKLGISGLFRNFALETIVERFRSAAKAAVAIRCGYCKPPAADATKSCID
CKLSYCNECFKAVHIWGTKKAQHDYVGPTNNFSRPKVLLCPEHNKEAVNMYCSKCKKSVC
RMCKLGGGGHVNHPVLSAKSAYK
Nucleotide sequence
Length: 1,700
>KH2012:KH.C3.557.v1.R.SL1-1
TGTTAGGAGGTTAGAATGTTGGGCGCTTTGAAAGTTTGGGCCAGTGGCCAGAAATCAAGC
AAGTATTCACCGAGAAACAAACGTAAGAGTCGACCTGGGAGCAGACCAAGTTCTCCTGTT
CCTTTAACATGTGAACCTCAGGAAAGTGACGTCGATAACACAGAGATGGTTAACTACGGT
CATCTGCTGACGTGTCCACTATGCGATGAGCTGTTCACACACCCCGTGCTACTACCATGC
CAGCATAGTTTATGCTACGGTTGCGCACGAGCTCAAATACTCAGCGATGACGCAATGATG
ACGTCAATGATCGAAGAGATTGCTGACGAGGACAGCGCCATTGAGATGTCTGCTGTGACG
TCACCAACTTACACGTCATCGTTTACGTCATCGCCACCTCGAAGTGTTACAAGAAAAAAC
TCGGATCCAGAATTCGATTTATCTCCACAATCGTCGAATTCGCGACAATCTGGATTTCCG
GATTTAGAGAACGAAGATCCGCAATTAATGGAAAGGGAAAGCGGAAATAACAATGGAGGC
AACAAACAGTCTATTGTTCTAACAACAAAGGATCTTCTACATTTTAAGTCCTCCGCCCGG
GATCGAACCTCCTCTACTCGAAGCCTTAAGTCCGGACACTCGACACCGAGAAGCGGTAGC
TTCATCGAGAGCGATGGTCAGAGGCCCGGTTTCAAAAAGTTCTTCTCGCCAGCTTCATCC
GGAAAAAATAGTCTGATGACGTCATCAATTACGTCATCGTCGTCGTCTCTGAGAAGCATG
TCGAAAAGACCAAGTCTTCGCCGAAGTAGCTCAACTTCATCTATCGCAAGAGCGGCATCT
ATGCGCAGTCACTCACAACATCATAACGCTCTCGCAACTTTGAAAAAAAGCCGAGTGAAA
AGTATATTTTGCCCAAGTTGTGAGCAACAGGTTCAACTTGGGAAACTTGGAATATCTGGT
TTGTTCAGAAATTTTGCTTTGGAAACCATAGTTGAAAGATTTCGATCAGCGGCAAAAGCA
GCGGTCGCCATAAGATGCGGTTATTGTAAACCTCCTGCAGCTGACGCTACCAAATCATGC
ATAGACTGCAAGCTGAGTTATTGCAACGAATGTTTCAAAGCAGTTCACATATGGGGGACA
AAGAAAGCGCAACATGATTACGTGGGACCAACCAACAATTTTTCCCGACCTAAGGTTCTG
CTGTGTCCTGAGCACAATAAGGAAGCTGTGAACATGTATTGTAGTAAATGCAAGAAGTCT
GTGTGCAGAATGTGCAAGCTTGGTGGTGGTGGACACGTCAATCATCCTGTGTTATCCGCA
AAATCAGCGTACAAGTAAGATGAATGATTGTAACTTACTTTATCCTCGCGTGGACGGAAA
AGGACAATCACACGGGTTTAACGCCTCGTGTCAGCTTAGGAGTTACCATGCATGTTACTT
CGTGAGTAATTATTTTTTGGGGGGGATTTTTTCATTTTTTNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATGGCTGATAACTTGGACAACCCATTAG
TGACCACTGGGTTAGAGCAATTGCTGTTAAGTGTCTTGCCCAAGGACACATACGCCCACA
ATGGTAGCAGCGTCAAGCCTTGAACCAATCACCTCTGGGTTACAGGCAGGCGCGCTAATC
ACTATGCCGCGGCGCCGGAC
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[58-121] 1.4E-9 |
| Pfam |
Znf-RING_LisH (IPR027370) - T[63-88] 5.6E-7 |
| SMART |
Znf_RING (IPR001841) - T[63-305] 3.7E-4 |
| SMART |
Znf_B-box (IPR000315) - T[395-438] 4.1E-4 |
| ProSiteProfiles |
Znf_B-box (IPR000315) - T[395-438] 11.092 |
| Pfam |
Znf_B-box (IPR000315) - T[397-436] 9.5E-7 |
| CDD |
Znf_B-box (IPR000315) - T[399-436] 1.60892E-5 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TRI18_HUMAN | 32.143 % | 97.4 | 1.24E-21 |
| TRI36_HUMAN | 64.789 % | 207 | 8.53E-60 |
| TRI46_HUMAN | 50 % | 155 | 5.04E-41 |