- Transcript 'KH2012:KH.C3.724.v3....' >
- Transcript 'KH2012:KH.C1.210.v1....' >
- Transcript 'KH2012:KH.C3.553.v1....'
Transcript Model
Transcript Id
KH2012:KH.C3.553.v1.R.SL1-1
Possible name(s)
SIX1; SIX2; SIX6
Gene model
Location
KhC3 [1,272,038 / 1,281,319]
Amino acid sequence
Length: 245
>KH.C3.553.v1.R.SL1-1
NAPNFQEKSRAVLRDWYTHNPYPSPREKRELAEGTGLTVTQVSNWFKNRRQRDRAAEAKE
RDGSDMSQGGMSIPPSGMGTPPHQQTGIDNINTPAHGSQIGADMMEQKSSIDVMSQQHVH
QQQLHQHHQDQMIHHHSHTPPHPSHHPMNPHHPQNNRLPPQSMIMSSLNDTHLQHHGVLP
SQYTLPGTPHSGQMTPLQHPEMHYPTHPQQLSHHMSSSASSHAAVSMHETMLQHGLANNP
VEMGS
Nucleotide sequence
Length: 1,953
>KH2012:KH.C3.553.v1.R.SL1-1
AACTGAGTAAAACACTTGGAGTGTTCTGCACTTAACGAGGTTTTCATCGTAACGGAAACA
CATTATTCTACAATCACGGCCTCAGAGCCAATGATGGCAGCCACCCTGGCGCTTAATCCT
TACCCAGCAATGCTTCCCCAGGTCGTTCAACATCCATCTGCTGTTGCCGCTGCAGCAGCT
GCGCATTTTTCCGCTGTTTCGGCCGGACCAAGCACACAAATGAACCCCGGCATGATGAGC
GGATACGGCGGGATGACAGGGCCCACACAACCGCCGACGACACAAAATGGACCCGGCCTT
TCGTTTGGTTTCACACAAGAACAAGTGGCTTGTGTTTGCGAAGTACTTCAACAAGGCGGA
AACATAGAACGTCTTGCAAGGTTCCTTTGGTCGCTTCCTGGATGTGAACATCTTCACAAG
AACGAAAGTGTCCTGAAAGCAAAAGCAGTCGTCGCATTTCACCGAGGAAACTTTCGAGAG
TTATACAAAATCATCGAAAACAATAATTTTTCGGAACACAATCACGCTAAACTTCAACAG
CTTTGGTTGAAATCTCATTACATCGAAGCTGAGAAACTGAGGGGTCGTCCATTGGGAGCC
GTAGGAAAATATCGGGTTCGACGAAAATTTCCACTGCCGAGGTCTATTTGGGATGGTGAA
GAAACCAGCTACTGCTTTAAGGTATTTATTTTTTCGATTGATTATTTAAGTATATTGAAT
AGGACATTAAAATGCCCCTAATTTTCAGGAAAAATCTAGAGCCGTTCTGCGGGATTGGTA
TACACACAACCCATATCCTTCCCCGAGAGAAAAGCGTGAATTGGCTGAAGGTACGGGACT
TACTGTGACTCAAGTTAGCAATTGGTTCAAAAATCGGCGACAACGCGATCGAGCAGCAGA
AGCTAAAGAAAGAGATGGAAGCGACATGTCCCAGGGCGGGATGTCCATCCCACCATCGGG
TATGGGGACACCACCGCATCAACAAACGGGAATCGACAATATCAACACACCGGCACATGG
AAGTCAGATTGGAGCAGACATGATGGAACAAAAATCCAGCATTGATGTGATGTCACAACA
ACATGTTCATCAACAACAGCTCCATCAACATCATCAAGATCAAATGATCCACCATCACTC
ACACACTCCTCCGCATCCATCACATCATCCCATGAATCCGCATCATCCGCAGAACAATCG
CCTCCCACCACAAAGTATGATTATGAGTTCATTAAACGACACACATCTCCAGCATCATGG
TGTGCTTCCGTCACAATACACATTACCCGGCACACCACATAGCGGACAAATGACTCCGCT
CCAACACCCAGAGATGCATTACCCAACTCATCCGCAGCAGTTATCTCATCACATGTCATC
ATCCGCAAGCAGCCACGCAGCAGTGTCAATGCACGAAACAATGTTGCAGCATGGATTAGC
GAACAACCCAGTCGAAATGGGATCGTAACTTTTAAATTGTAAGGTGGATAAACAAAGTTT
TATTTTTGTATTTGCAGTCACGCTATTTTATTATTATTGTCTATAGTTATACGGATATGC
ACAACTAGAATCAGATGCTGTCGTACCACTGTTGATTATAGAAAATTGTCAATATAGTTG
GCCACAGCACATCACCATACATTCGACAGCCATTCCAACTTAAATTTTAGAGAAATATTT
AATAGCATTTTGTAATGGCATTTCTCTACACAATCTTATTAAATATTTAGTAGTTTTCCT
GACAAGCATGTTGCATTACACTTGTAAGAGCCATAATGTTGACATCTGCATCGCAGATAT
ATCGCTTCGGTGACGTGTAGTAGTCCATGTGCATATTCACACGCTCTAATATCCGCTGCT
TTACTCGAATCTAAATGTGTATTACTGTGATGTCACAATTAATTTTCCATGTGCTTAGCA
GTGACCAACAAACATGGATATTTTTTACGATTT
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[1-56] 15.24 |
| CDD |
Homeobox_dom (IPR001356) - T[4-54] 1.60756E-17 |
| Pfam |
Homeobox_dom (IPR001356) - T[4-54] 1.8E-13 |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[5-59] 2.57E-17 |
| SMART |
Homeobox_dom (IPR001356) - T[6-60] 2.1E-13 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[31-54] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SIX4_HUMAN | 61.29 % | 82.4 | 5.56E-18 |
| SIX1_HUMAN | 83.607 % | 118 | 4.71E-32 |
| SIX2_HUMAN | 89.091 % | 112 | 1.39E-29 |