- Transcript 'KH2012:KH.C12.200.v1...' >
- Transcript 'KH2012:KH.C12.188.v3...' >
- Transcript 'KH2012:KH.C3.53.v1.A...'
Transcript Model
Transcript Id
KH2012:KH.C3.53.v1.A.nonSL3-1
Possible name(s)
BBS4; TTC6; TTC8
Gene model
Location
KhC3 [3,555,381 / 3,564,325]
Amino acid sequence
Length: 545
>KH.C3.53.v1.A.nonSL3-1
TRTNKTLKMDSTADIPLPSASAVVKPKPRRKKAPSLPAVERRNWLIHTHYVRKEWQTCKT
LIQEQLKETNGQCEYAVYIQAMIMRSEGWIQQSMELFQACHLLNPTNPDNLKQIARNLIL
LGKHKSAIECYNRASELSERDWDICHCLGLCYHFLKDYDKAEQCFIESLKLNRHTVTYNM
LAKLYLETGNHDKAMDVLSKGVEFSPENTDLLTLLGLLHLRKSSFHKAFELLGQAMTFDQ
ENYKAILAAGSMMQKHGDFDVALSKYRVAAQAVPESSSLWNNIAMCFFGKKKYVAAISCL
KRANYLSPFDWKILYNLCLLHLTMQQYASAFHFGSTAISLKQDHGPLYMLLAVALTNLGQ
EENAEKAYEEAIRLNGSDIHTVLNYCVFLHNRSKSKQAAKLLSSLQKNMPTDKADINKEV
IELNKKLTAALNVGDKIVAEKEKSEKKKKQKDKAPKTSTPNPFSPTSAQPPPNEIDGMPS
PATSSLPSVVQSKLPPLRSRPSGEIKPPKYDITKPDTDDDVLSRLPTAPTHDPYAGKPTR
KAVAE
Nucleotide sequence
Length: 2,356
>KH2012:KH.C3.53.v1.A.nonSL3-1
ACTTTGAGTTGTTTGGAATATTTTGTTTTATATTTACATTGGTCGTTATGAAGTATATGC
TTTAGCGTACGTTGGTTACATACTCGTGGTGCTACAAACAGCTTTAAACTCGAACAAACA
AAACACTTAAGATGGACAGTACTGCAGACATACCGTTGCCTTCTGCTTCAGCTGTAGTTA
AACCTAAACCAAGAAGAAAGAAAGCTCCTTCCCTGCCTGCTGTGGAACGCCGTAACTGGT
TGATTCATACACATTATGTGAGAAAGGAGTGGCAAACATGCAAGACACTCATACAGGAAC
AACTAAAAGAAACAAATGGTCAATGTGAATATGCTGTGTACATTCAGGCCATGATAATGA
GATCTGAGGGTTGGATTCAACAATCCATGGAATTATTTCAAGCGTGTCATCTGCTTAACC
CAACCAACCCTGACAATCTGAAACAGATTGCTAGAAATTTGATACTGCTTGGCAAGCATA
AAAGTGCAATAGAATGCTACAATCGTGCTTCTGAATTAAGTGAAAGGGATTGGGACATAT
GTCATTGCCTTGGATTGTGTTACCACTTCTTAAAAGATTATGACAAGGCCGAGCAGTGCT
TTATTGAATCATTGAAACTTAACAGACATACAGTTACATACAATATGCTCGCAAAGCTTT
ACCTTGAAACAGGGAACCATGATAAAGCTATGGATGTATTAAGCAAAGGGGTTGAATTCT
CTCCGGAAAATACTGATCTGTTAACTTTGTTGGGGTTGTTACACTTGCGCAAATCAAGCT
TCCACAAAGCATTTGAACTCCTTGGGCAAGCAATGACTTTTGACCAAGAAAATTATAAGG
CTATCCTTGCTGCAGGCTCCATGATGCAGAAACATGGAGATTTTGACGTTGCTTTGTCTA
AATACAGGGTTGCTGCTCAAGCTGTGCCTGAAAGTTCCTCATTATGGAACAACATTGCGA
TGTGCTTCTTCGGCAAAAAGAAATACGTAGCTGCTATCAGCTGTTTAAAGCGAGCGAACT
ATCTTTCACCATTTGATTGGAAGATCCTATACAACCTCTGTCTGCTACATCTAACAATGC
AACAGTATGCGAGTGCTTTTCACTTTGGTAGTACTGCCATTAGTTTGAAACAGGATCATG
GACCATTGTACATGCTCCTTGCTGTTGCTTTGACTAACCTTGGACAAGAAGAGAATGCAG
AGAAAGCTTATGAGGAAGCAATAAGGCTAAATGGATCTGACATCCACACAGTACTTAACT
ACTGTGTTTTCCTTCATAATCGATCCAAGTCTAAACAAGCAGCAAAACTTCTTTCATCTT
TGCAGAAAAACATGCCAACAGATAAAGCCGATATAAATAAAGAGGTAATTGAGCTGAACA
AGAAATTGACAGCTGCGTTAAACGTTGGGGACAAAATAGTCGCAGAGAAAGAAAAAAGTG
AAAAGAAGAAGAAACAAAAAGACAAAGCACCCAAGACCTCCACTCCTAACCCCTTTTCCC
CAACAAGCGCCCAACCTCCACCAAATGAAATTGATGGCATGCCATCTCCAGCTACAAGTT
CACTACCCAGCGTGGTTCAGTCCAAGTTACCCCCACTACGCTCACGGCCATCTGGTGAAA
TCAAACCACCGAAATATGACATCACCAAACCGGACACAGATGATGATGTATTGTCTCGCC
TACCAACTGCTCCAACACACGATCCATATGCTGGGAAGCCAACCAGAAAGGCTGTGGCAG
AGTAAAGTAGGAGCTTGAAAAGCAATAACGGTTTCTGTTTTTTTTTTGTTCTAGTTGGTA
TGGTCTCCACTGTCATATTGTTATGTTATACTTTAGATATGTTGAATATAATGTATGTCC
GAAAAAGATTTAAAGTATTGTGGGGAAAGGTGGGACACCTTTTCATTCTATTTTCTCGTC
CCATTTGGTAGTAAACAAAGAACATTCAAAGAATTATAAAACTGTATCCTCACAAGTCAT
AACTCCTATAGACTGTTGTTAATTGTTTAAAACAGGATCAGGATGTTTGGATATTATGTG
CTAAAGGTGTCGCGTCTTCCCCCACCCTAAAAACAATTAACTCATAAATTGCCCCCCCCC
AAAAAAAAACACTGATGTTTTTTCTTCACTCTTTCATTCAATCTTTCAATTGAGTGAAGA
TTTGAACGCCAGCTTGGACACAAGCAGCACAACCACTATTTCTTTAAATCTCTTTGTAAA
TTTGTTTATGTACTCCCGGCATGTTAAATGTTGACATTTAAACAAACAAACGACAGAAAG
CTTTAAAAAAAACTGTTCTTAAAGATTTTGATTTACCATCTTTAAACTGTACTTAATACA
GATATGGTGTCAGTCA
| Gene3D |
TPR-like_helical_dom_sf (IPR011990) - T[30-176] 1.0E-18 - T[177-436] 1.7E-40 |
| ProSiteProfiles |
TPR_repeat (IPR019734) - T[74-107] 5.31 - T[108-141] 7.346 - T[175-208] 11.092 - T[209-242] 8.408 - T[243-276] 7.611 - T[277-310] 7.375 - T[311-344] 5.31 - T[345-378] 8.231 |
| ProSiteProfiles |
TPR-contain_dom (IPR013026) - T[74-412] 44.799 |
| SMART |
TPR_repeat (IPR019734) - T[108-141] 5.0 - T[142-175] 7.8E-5 - T[176-208] 11.0 - T[209-242] 19.0 - T[277-310] 0.51 - T[311-344] 28.0 - T[345-378] 0.025 |
| Pfam |
TPR_repeat (IPR019734) - T[114-139] 0.024 - T[145-173] 4.4E-4 - T[177-208] 3.1E-4 - T[278-309] 0.023 - T[346-376] 2.4E-5 |
| SUPERFAMILY |
TPR-like_helical_dom_sf (IPR011990) - T[126-302] 2.66E-29 - T[266-402] 2.13E-22 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| BBS4_HUMAN | 58.277 % | 506 | 6.42E-176 |