- Transcript 'KH2012:KH.C3.455.v1....'
Transcript Model
Transcript Id
KH2012:KH.C3.455.v1.C.ND1-1
Possible name(s)
SNX13; SNX14; SNX25
Gene model
Location
KhC3 [5,531,538 / 5,541,058]
Amino acid sequence
Length: 723
>KH.C3.455.v1.C.ND1-1
MTLLPILKLAKDIFSNMYIPIQAVETILDCFFDFEIKFSKTCRELVSFGVKKQSEYLQDV
SEVLLYLLLPVDEFHCRPLKYMMRELLVHGVFLPMFKLYSDPDYLNQYVNWLISDNCITS
EWFLNVLRHSSEIGELHSIREKCDEEIARLRAKDTVGDDPAIKQQLGSMRYVKNLCERQI
RKKHDGNVYTDNIELVKYMQSVNGQAYLFFWLTVDGYRASAEQQLNEVKLQQLQGAIQRT
PDMEMLRAIGHNIYDQYLSKHAEPRVPLDQTTDRALKKKLDSGEPSPYVFDDIQQKVFGI
MQKSESFFPAFKASPYYMRLLAELDLLRETSLTSNDTNGSVGSSLDDISTSENEEVNKLT
AVITQTGICKEHGKTYAMFAVTVTRHWGNGRQESWDTFRRYREFYDLHLSLKENGSNLST
IRFPGRTFFKDLKEDFLERRRTELNQYLSSVLSLEHCGKAMECLHTFLDAKAYQKNPRTF
ASKMDSMMRESAQSVANFMSQAPDNLIGGIQRASDKVSGGIQKFSDKLPGSERKLSNEEN
HIEYNVILMVAALQQVITTVFGDRMNRKIVDYVDNAVSAQQVSEYIRTFQDSFWPGGILA
DVTPVRDDITVMRTRVLTKTKLHGVIPDEVRPLVGNETSRRGMARLFELLQHQELNTRFC
YVLLEGVLCRVFPENRFQDLFTKFHSSSPKMRSHKRALMTRGVDKWKQETRERKSRVLRR
FES
Nucleotide sequence
Length: 2,994
>KH2012:KH.C3.455.v1.C.ND1-1
ATGACGCTCCTACCTATTTTAAAACTTGCTAAAGATATTTTTTCAAACATGTACATTCCT
ATACAGGCAGTGGAAACGATTCTGGATTGCTTTTTCGATTTCGAAATCAAATTTTCCAAA
ACTTGTCGAGAATTAGTGTCTTTTGGTGTCAAAAAACAAAGTGAATATTTACAAGATGTG
AGTGAAGTCTTATTATATCTCTTGCTTCCCGTCGATGAATTTCATTGTCGACCGCTCAAA
TACATGATGAGGGAGCTTTTAGTACATGGAGTATTTCTTCCAATGTTTAAACTGTACAGT
GATCCAGACTACCTCAATCAGTACGTCAATTGGCTGATAAGCGACAATTGCATTACAAGT
GAGTGGTTTCTTAACGTTTTACGACACAGCTCCGAGATCGGTGAATTACACTCGATACGT
GAGAAATGTGACGAAGAAATCGCTCGACTGCGAGCCAAGGACACGGTCGGAGACGACCCC
GCCATTAAACAACAGCTCGGTAGCATGAGGTATGTGAAAAATCTATGCGAGCGTCAGATA
AGGAAGAAACATGACGGCAACGTTTACACTGATAATATAGAACTTGTGAAATACATGCAG
TCAGTGAATGGGCAAGCATATCTGTTCTTCTGGTTAACAGTGGATGGATATCGTGCGTCT
GCTGAACAACAACTTAATGAAGTGAAGCTGCAACAACTACAAGGTGCCATACAACGAACA
CCTGACATGGAGATGCTTCGTGCCATAGGACACAACATATATGACCAATACCTCAGCAAA
CATGCAGAACCACGGGTGCCGCTGGATCAAACAACAGATAGAGCCTTGAAGAAGAAGCTT
GACTCTGGGGAGCCATCGCCTTATGTGTTTGATGATATTCAACAAAAGGTGTTTGGCATC
ATGCAGAAAAGTGAATCTTTCTTCCCAGCATTTAAAGCAAGTCCTTATTACATGAGGTTG
CTTGCTGAACTTGATCTGCTGCGCGAAACAAGTCTAACATCAAATGACACCAATGGTTCT
GTGGGTTCGTCACTTGATGATATATCAACATCGGAAAATGAAGAAGTCAACAAACTAACT
GCTGTTATAACACAAACAGGCATATGTAAGGAGCATGGGAAAACATACGCCATGTTCGCT
GTCACAGTAACTCGTCACTGGGGTAATGGTAGGCAGGAATCATGGGATACTTTCCGCAGA
TACCGAGAGTTTTATGACCTTCATTTAAGTCTGAAGGAAAATGGAAGCAACTTGAGCACC
ATCCGCTTCCCCGGGAGGACTTTCTTCAAAGATCTAAAGGAGGACTTCTTAGAGAGGAGG
AGGACAGAGTTGAACCAATACCTCAGTTCTGTTCTATCACTTGAACATTGTGGGAAAGCC
ATGGAATGTTTACATACCTTCCTGGACGCAAAGGCTTATCAGAAAAATCCAAGAACTTTT
GCAAGCAAAATGGACTCCATGATGCGAGAATCAGCGCAGAGCGTCGCCAACTTCATGAGC
CAAGCTCCGGATAACCTTATAGGTGGAATACAAAGAGCATCCGATAAAGTGTCCGGAGGA
ATTCAGAAGTTTTCCGATAAACTTCCTGGATCAGAGAGGAAACTTAGCAATGAGGAAAAC
CACATCGAATATAACGTAATTTTGATGGTTGCTGCATTACAACAAGTCATAACTACTGTG
TTCGGGGATCGAATGAACAGAAAAATCGTGGATTACGTGGATAATGCAGTTTCAGCTCAG
CAGGTGAGCGAGTACATTCGGACTTTCCAAGACTCGTTTTGGCCAGGTGGAATACTTGCT
GATGTCACACCAGTTCGTGATGACATCACGGTCATGAGAACTCGTGTTCTCACAAAGACC
AAACTTCACGGCGTGATACCAGACGAAGTACGGCCGCTCGTCGGTAACGAGACAAGTAGA
CGAGGTATGGCTCGACTGTTTGAACTTCTCCAACATCAAGAGCTCAACACGAGGTTCTGT
TACGTTCTATTAGAAGGTGTGCTGTGTCGTGTGTTCCCAGAAAACAGATTTCAAGATCTC
TTCACGAAGTTTCACTCCTCGTCACCTAAGATGCGCTCTCACAAGAGGGCACTTATGACA
CGCGGAGTCGACAAGTGGAAACAAGAAACTCGTGAGCGAAAGTCGCGCGTTCTACGTCGT
TTCGAATCGTGACGTAGAATCCCGTGTGTGACGTCATATACGTTACGTAGAATCTCGTCT
CTCACGTCATGTAATTGACGTAGAATCCCGCCTACTACGTCATATTCATGACGTAATATC
TCGTCAATTCAACGATTAAGTTTCGGTGCTTTTTTTGTCGCAACATTCAGCAGTCGAATG
TTACGTCACTTCTACCCGTGTGTGCAATCTTACAACATGGTTGCGTGTCCTGTGATCTAC
TTTATTCGTGACGTCAGAGTGACGTAACGCCCCTTGTGCAATCTCAACATCACCCACTCG
TTACGTCATCCGTCTTTGTGATTACGAATGACGTCATCATCACGTCATCCAAATGATTGA
CACCAGCAACTCAACTTCTCTCCTTGAATGATTTACCTGAGCCTAACATTTGCATCTGAT
CTTATACGTCATCATCGTATCAGTGACGTCATCAACAATGACATCATAACCATATTTAAC
ACTCAGCAGCTTAAGATTTCCAACTTAATTCTAATAATTCAATCAGCATCCAAAATGATG
CAGCGTCTTTTTAACCAACTCCTAAACATAAAATTTAAATTTTCAAGTGATTTTCACACT
GTAGCGCTAAAGATATAGTACAATTGAAAAGCAAACGCAGATGGTTAAAACCATTTCCCT
TCGATTTTCGCCATGTTTTTGGTCTCGATTGAAACCCCCTTGCATTTTTCACCACGTACA
CCAGCGTAGCTTTATACGTCGTTTACTCACATGTACTAAGTGTCTAGTGCAATAGAAATT
GCTTATTGTTAACGTGCATCACCCATTGACGAAATAAACGCGCACTGTGAATAA
| ProSiteProfiles |
Phox_assoc (IPR003114) - T[1-117] 23.932 |
| Pfam |
Phox_assoc (IPR003114) - T[42-112] 9.8E-15 |
| SMART |
RGS (IPR016137) - T[188-321] 3.8E-15 |
| CDD |
SNX13_RGS (IPR037896) - T[188-319] 2.57261E-65 |
| SUPERFAMILY |
RGS_sf (IPR036305) - T[196-324] 8.1E-18 |
| ProSiteProfiles |
RGS (IPR016137) - T[197-321] 10.18 |
| Pfam |
RGS (IPR016137) - T[197-319] 6.5E-13 |
| Gene3D |
PX_dom_sf (IPR036871) - T[351-480] 1.5E-22 |
| CDD |
SNX13_PX (IPR037437) - T[355-471] 1.87279E-56 |
| ProSiteProfiles |
Phox (IPR001683) - T[357-474] 14.351 |
| SUPERFAMILY |
PX_dom_sf (IPR036871) - T[357-471] 6.15E-19 |
| SMART |
Phox (IPR001683) - T[360-471] 3.3E-11 |
| Pfam |
Phox (IPR001683) - T[370-469] 1.9E-16 |
| Pfam |
Sorting_nexin_C (IPR013937) - T[550-653] 1.0E-20 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SNX13_HUMAN | 37.646 % | 502 | 8.16E-166 |
| SNX25_HUMAN | 24.92 % | 107 | 6.6E-24 |
