Aniseed - Transcript Card

Sequences

Amino acid sequence

Length: 880

>KH.C3.442.v1.A.SL2-1
NKMPSKPTRRQFARKCKKTRQHIGENSMSNNNDTEEKVTPAAEIREPTSPTSERAECLTV
RRSLRRKCRKDYSDTSQPPTKQSWGSSRKRLCKVEKHTPDENSSELLQAMLPDEVMLRIF
SYLLEKDLCRVAQVCKRFNVLSNDPVLWKYLYQELFEYTIPMMNPEPNTFQQVAPEDCDS
TNPWKESFSQLYKGVHVRPGCMENYSNSTTDAIKLRPRDNIQYYETIVDALGGVVEGDHN
GIIFVHPGIYSDEWIFIDFPVTILGAGPDKVSSKVVIENMCETTIVFTEGCADSFIGYMT
IWFLPEDPNAPHHRYCIEIGSNCTPTIDHCMIRSTSTVGSAVSCAGEGANPTFSHVTISD
SENVGLYIADHAEGLFQDCEIHNNALAGIWVKNYAKPIIRRCHIHDGRDVGVFTFDNGYG
YFEKCDIHHNRIAGFEVKAGANPTVVRCSIHHGQTGGIYIHARGRGQFLENKIHSNQFAG
LWVTSNSDPTIRCNEIYNGHQGGVYIFTDGKGLIEKNNIYGNALAGIQIRSNSSPIVRHN
KIHDGQHGGIYVHEKGQGIIEENEIYSNTLAGVWVTTGSSPTLRRNRIHSGRQVGVYFYD
NGNGILEENDIYNHMYSGVQIRTGSNPVIKMNKIWGGQNGGILVYNSGLGLIERNEIFDN
AMAGVWIKTDSNPLMRGNKIHDGRDGGICIFNGGKGILEKNEIFRNAQAGVLVSTNSHPQ
LRRNRIYDGFAAGIEITNGATAVLERNQVFNNKFGGIFLATGVSCILTENRVFGNKNAIE
KAVKRGHCLYKISSYTSYPMHHFYRCYTCNTTDKNAICVNCVRKCHQGHVTEFTRHDRFF
CDCGAGTLSNTCCLAGEPTHDTDTLYDSAPPIESSTTRHG

Nucleotide sequence

Length: 3,398

>KH2012:KH.C3.442.v1.A.SL2-1
AATCTGTAGAATGTTGGAATATATGAAATAAAATGCCTTCCAAACCAACACGACGCCAGT
TTGCAAGAAAATGCAAGAAGACTCGACAACATATCGGGGAAAATTCAATGAGTAATAATA
ATGATACTGAGGAGAAAGTTACACCAGCTGCTGAGATCAGAGAGCCAACCTCACCAACTA
GCGAACGCGCTGAGTGTCTAACTGTGCGGAGATCTCTCCGTAGAAAATGCCGGAAAGATT
ATTCGGACACATCCCAACCTCCCACTAAGCAATCCTGGGGATCCTCACGAAAGAGATTGT
GCAAAGTGGAAAAACATACACCAGATGAAAATTCAAGTGAACTCCTACAAGCAATGCTTC
CCGATGAAGTAATGTTGCGAATATTTTCCTACTTACTTGAAAAAGACTTGTGTAGAGTTG
CGCAAGTCTGTAAGCGTTTCAATGTCCTTTCCAATGACCCAGTGCTTTGGAAATATTTAT
ACCAAGAACTATTTGAATACACAATTCCTATGATGAACCCAGAACCTAACACCTTTCAGC
AAGTTGCCCCTGAAGATTGTGACAGCACCAACCCTTGGAAAGAAAGCTTTTCACAACTTT
ACAAGGGTGTCCATGTAAGACCTGGTTGCATGGAGAATTATTCTAACAGCACAACCGATG
CAATTAAGTTACGTCCAAGAGATAATATACAGTATTATGAAACCATAGTAGATGCATTAG
GAGGGGTGGTGGAAGGGGATCATAATGGGATCATATTTGTCCATCCAGGAATATATTCCG
ATGAATGGATATTTATAGATTTTCCTGTTACTATCCTTGGTGCAGGACCTGATAAAGTGT
CGAGTAAAGTTGTGATAGAGAATATGTGTGAAACTACCATTGTATTCACTGAAGGTTGCG
CGGATTCATTCATTGGCTACATGACTATATGGTTTCTACCTGAAGACCCAAACGCTCCTC
ACCACCGATATTGCATTGAAATCGGATCTAATTGCACTCCCACCATTGATCATTGTATGA
TACGAAGCACATCTACAGTCGGTAGTGCGGTTAGTTGTGCGGGTGAGGGAGCGAACCCAA
CTTTCAGCCACGTCACAATTAGTGATTCGGAAAACGTTGGTTTGTACATTGCTGATCATG
CTGAGGGCTTGTTCCAAGATTGCGAGATCCACAATAATGCATTGGCGGGCATATGGGTGA
AGAATTACGCAAAACCAATCATAAGAAGATGTCATATACATGATGGGAGGGACGTGGGAG
TGTTTACATTCGATAATGGATATGGCTACTTTGAGAAATGTGACATCCATCATAACAGGA
TAGCTGGCTTTGAAGTGAAAGCTGGTGCTAATCCCACTGTTGTGAGATGTTCTATACACC
ATGGACAAACTGGTGGTATATATATACATGCCAGGGGGAGAGGGCAGTTCCTTGAAAACA
AGATCCACAGCAACCAGTTTGCAGGGCTATGGGTGACTTCTAATTCCGATCCCACTATCA
GATGTAATGAGATATATAATGGACACCAAGGTGGTGTATACATATTTACTGACGGCAAAG
GTCTAATTGAAAAGAACAATATATATGGCAATGCCTTAGCTGGGATTCAGATAAGGAGTA
ACAGTAGCCCAATAGTTCGACACAATAAGATACATGATGGGCAACATGGCGGCATATATG
TGCATGAGAAAGGACAAGGGATCATAGAAGAGAATGAAATTTACTCTAACACACTAGCGG
GGGTATGGGTGACCACGGGTTCGTCCCCAACTTTAAGAAGGAACCGAATCCACTCCGGTC
GGCAGGTTGGGGTTTATTTTTATGACAACGGGAACGGGATTCTCGAGGAAAATGATATTT
ACAATCACATGTATTCCGGAGTTCAAATAAGAACTGGTAGCAATCCTGTAATAAAGATGA
ATAAGATTTGGGGCGGTCAGAATGGTGGAATACTTGTGTATAACTCGGGGTTGGGTTTGA
TTGAACGTAATGAGATATTCGACAACGCTATGGCTGGAGTTTGGATTAAAACTGACAGCA
ATCCACTCATGAGAGGGAATAAGATACACGATGGTAGAGATGGCGGAATCTGTATTTTTA
ATGGTGGTAAAGGGATTCTAGAGAAGAACGAAATCTTCCGTAATGCACAAGCGGGAGTCC
TCGTCAGCACTAACAGTCATCCTCAGCTCCGGAGGAACAGGATCTACGACGGATTCGCAG
CTGGCATAGAAATCACAAACGGAGCAACTGCCGTGCTTGAGAGGAACCAAGTGTTCAATA
ATAAATTTGGAGGAATATTTCTCGCAACTGGAGTTTCTTGTATTTTAACAGAAAACCGAG
TTTTTGGGAACAAGAATGCGATTGAGAAAGCTGTTAAAAGAGGTCACTGCCTATACAAGA
TATCTAGTTATACAAGCTACCCCATGCACCATTTCTACAGATGTTACACGTGCAACACAA
CGGATAAAAATGCCATTTGTGTTAATTGTGTTCGGAAATGTCACCAAGGACATGTCACTG
AGTTTACAAGACATGACAGATTCTTTTGTGACTGTGGGGCAGGAACACTGAGCAATACTT
GTTGCCTTGCAGGGGAGCCCACACATGACACCGATACTTTATATGATTCCGCGCCACCTA
TTGAGTCAAGCACAACAAGACATGGATGATTTTTTACTTTTAAATCTTTCTCTGCATAAG
CAGGCAGTTGCATCTGTTTAATTTCTTATACAAGACCAAATGAAGGTCATTTTATTGTAA
ACTTATCTTAACTGAGTGTGGTAAGAACAAGTTTTACAGAGAAACAAATTGCCTGTCTAA
GTTTAATATTCCTTCCTGTTTTTGCAAACAGCTTTTTTTTACTAAAATATATCATTACTT
TAGTAGATTTACCAATTCCAATGTATATTCTTGACACAGTTGGGTGGTACATACTTTCAT
ATTTTTCTTTGTTGTGTATAAACTTTGTTGATTTTTTGCCTTATAACTATAATTTTAGGA
CTACCAGTTCTTTGTTCCAAAGTTAAGTAAAACTTTTTTATGATTCCCCCAAAAAATTAA
AATATTTTATTTCTGTTGGAAATCAAACACGCCAAGTGCCCCTAGTAAATATTGTGAAGT
AACCCATTGGTGCCAATCTGTATCTTTTTCCATGCACTGCCCTTTCAACACGTTCCAAAT
GACTTAAAATGGCTCAACAAAATCTCGTTCACAATGAAATCCATAACATTGCCAGATGAC
AAGAGACAATTTTTCACTGTTTTCAAGTATAACCTCGGATTGCAGCAGTATTTCTTATTT
CAGTTCTTTTAGTTGAATCATCACATCTTCTATTTATTTTTGCACGGCTCACTATCGACT
AAGCTGCTTTACTACTGATTGTAAATGCTTCGGTATTT

InterProScan

PANTHER	FBX11/DRE-1 (IPR029799) - T[85-879] 0.0
SUPERFAMILY	F-box-like_dom_sf (IPR036047) - T[101-164] 9.81E-19
ProSiteProfiles	F-box_dom (IPR001810) - T[105-151] 13.949
Pfam	F-box_dom (IPR001810) - T[111-152] 1.8E-13
SMART	F-box_dom (IPR001810) - T[111-151] 3.5E-8
SUPERFAMILY	Pectin_lyase_fold/virulence (IPR011050) - T[224-280] 8.44E-27 - T[316-445] 8.44E-27 - T[434-553] 5.14E-20 - T[618-779] 7.7E-21
Gene3D	Pectin_lyas_fold (IPR012334) - T[226-512] 2.8E-26 - T[534-671] 5.3E-25 - T[672-787] 1.4E-16
SMART	PbH1 (IPR006626) - T[348-370] 23.0 - T[371-393] 7.3 - T[394-416] 2000.0 - T[417-439] 250.0 - T[440-462] 5.5 - T[463-485] 1300.0 - T[486-508] 180.0 - T[509-531] 35.0 - T[532-554] 18.0 - T[555-577] 210.0 - T[578-600] 72.0 - T[601-623] 130.0 - T[624-646] 580.0 - T[647-669] 88.0 - T[670-692] 8.0 - T[693-715] 460.0 - T[716-738] 46.0 - T[739-761] 410.0
SMART	Carb-bd_sugar_hydrolysis-dom (IPR006633) - T[385-507] 2.2E-8 - T[518-645] 27.0 - T[661-790] 1.1E-4
TIGRFAM	Para_beta_helix_rpt-2 (IPR022441) - T[549-590] 6.2E-6 - T[733-777] 2.6E-6
ProSiteProfiles	Znf_UBR (IPR003126) - T[786-857] 8.417
SMART	Znf_UBR (IPR003126) - T[791-856] 1.0E-5
Pfam	Znf_UBR (IPR003126) - T[801-847] 4.8E-7