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  1. Transcript 'Phmamm.CG.MTP2014.S1...'
  2. Transcript 'Haaura.CG.MTP2014.S2...'
  3. Transcript 'KH2012:KH.C3.21.v2.A...'
  4. Transcript 'KH2012:KH.C3.21.v5.A...'

Transcript Model

Transcript Id

KH2012:KH.C3.21.v5.A.SL1-2

Possible name(s)

HMCN1; HSPG2; LAMA2

Location

KhC3 [6,317,991 / 6,339,324]

Sequences

Amino acid sequence

Length: 1,813

>KH.C3.21.v5.A.SL1-2
NRDAVRQALLERRSVHLDPFFREQALIRSKRQASDFLSDDEDLSSLDGSGDDSLSRLKVA
STPTPTLEYNVASSTDWGWYRTKINFLDSIEYSPALADYHTDEFLEVSDQIMVAIEEHLN
NYMGGYHEATPLMIFMKGGDVYAMVDVGMCMGQSIDEVTDALQSLVRDGMIGSFRVSDSG
FSIRQIGVDSGRVECAPGPVLESTTPAPAFETTLIYTTTTTTERTPPLPTFDLSTTTPPQ
APQTTTYYPERSTTYFPETNPPFIPQTAPPFVIETVPPPFVPQTTPPKPLVTNPPGPRLC
RADQATCRNGQCIDRSYICDGTADCLDGSDEPPTCAVTNNCDPTEFLCVGTGVCAQKTWR
CDGDNDCGNNYDETNCPTASPDAACPSMHFQCNSGACIPSSYQCDNERDCDDGSDENNCR
PPVVVSPPERFVNATQGDTVELFCEAVGVPTPIISWRVNWGNVPPPPRVTMTTVGGKGVL
TIRKVKKSDQGAYTCEGINSQGAIFGRPDAILQVTEGGIENGGSEIGCPEGQFSPTGSLD
DCTACYCFGVTDQCSASKLEFTEIGIEFTQPDDDQGVTLEPKEKSTNGGPPPDLPVTSNQ
IFTNPAAKELQLIDLSKRFLAAAHYWSLPAQFVGAKINSYGGTLEFSFSYNNSYNFTPRP
TNASDVILEGNGKTLVYHHDGPAPKPGVKNQANVLLTEDKWKNEDGSDVSREDMLGVLAN
VDRILLRTVYDNSMLSTGIGDVKLQVARAPSPKLPGEEQPAGSLASMVEECECPPGYTGL
SCELCDEGYIRMRAGPVLGRCVRETPAIPICDTGYTGPECTECEEGYTPFEGGCTRYPGT
YCDVAGSIGVGVGRQCKCKAGCEGPRCNKCKPGFYYLSQDNPDGCKPCFCMGVADTCESS
TWNRTQVSPSFRSGDYFILTNRLQASRFHDHITYVKSLDGTRQPVVTAHLNLLPLDVYYW
MLPEEFVGNKITSYGGRLDFTINYSEIEGARPITRIAIAKITGNGITLVHMSDTHPPPDR
DTRFVIEMVESKWQKADTSEATREELMMVLSNVESFLVRATFSNRVQTTSISNIYLEVAS
PQHTGRGRAYKVEQCSCPPGYTGLSCEECSNGYHRIDGEYLGTCVKCDCNGHSNTCDKTT
GVCNHCRHNTAGDHCEQCDYGYYGDARGGAEGCQRCPCPLIRNDIVTCHVTRGGEPVCDR
CPPGYSGNICNLCAPGYEEVSNSPVLVCQLSDDSSCRCDPSGSTGDTCDENGQCNCKASA
TGKRCDECKPGYYYLSVDNEEGGCLPCFCMGITTDFSENFGSFSLTDRLQRSSVTDGFEV
TNRGGSISHPRLDTLQRGTSYYWVLPEEYKGDKIVSYGGKLQYTVTYTTYAQGVQLHDSD
VIITGNDITLLSTGSDSAVVPNRPTEKVIVFREANWKRADGQPATREHLLMVLADVETIL
IRATFSSSMLRTSLSSISMETASESVLMTEPAMEVEQCVCPAGYEGLSCEDCAPGFTRSG
GGIYLGLCHSCQCNGHSDQCDSETGVCQSCRDNTSGDRCEQCNVGYFGDATQGTPADCRL
CACPGYGDNSFSDTCEYNTDSRNLVCTNCREGHVGDRCERCAPGYTGNPQDEGGECVRRA
EPVVGSHPVVKVSPKRVNARRGASVTVQCEVNSPYPTIVEWYKGTSSSRLSLPPTATISN
NGHTLTFARFGRNEAGTYVCIAHNNYGVGSDTTVLLIARERPMIKVRVEEPRRITTRPGS
QATFVCTATSKMPAYIVSWTKRGGMLPLSRATDYNGILHIRDLRPSDAGTYVCTGSNMYT
TDSETATLEVIGG

Nucleotide sequence

Length: 7,353

>KH2012:KH.C3.21.v5.A.SL1-2
AACCGAGACGCTGTGAGACAAGCCCTACTAGAACGCCGTTCGGTTCATCTCGATCCATTT
TTTCGGGAACAAGCACTGATAAGAAGCAAACGACAAGCTTCGGATTTTCTTTCTGATGAC
GAAGATTTATCGTCGCTAGATGGCAGTGGAGATGACTCTTTATCAAGGCTAAAAGTAGCG
TCTACTCCAACCCCTACCCTTGAATATAATGTGGCATCGTCTACAGATTGGGGATGGTAC
AGAACAAAGATTAACTTTCTGGATTCCATTGAATACAGTCCAGCGCTCGCTGATTATCAC
ACAGATGAATTTTTGGAAGTTTCCGATCAAATTATGGTTGCGATTGAAGAACATTTAAAC
AACTATATGGGAGGTTACCATGAAGCAACTCCACTAATGATATTTATGAAAGGTGGTGAT
GTTTACGCCATGGTTGATGTCGGCATGTGCATGGGGCAATCCATTGATGAGGTCACGGAT
GCTTTACAATCGCTCGTTAGAGACGGAATGATTGGGTCGTTTCGGGTCAGCGATTCTGGG
TTTAGTATCCGACAAATTGGGGTGGACAGTGGACGTGTTGAATGCGCCCCTGGACCTGTA
CTTGAATCAACCACTCCGGCTCCCGCCTTTGAAACAACTTTGATTTACACAACCACCACC
ACCACAGAAAGGACTCCACCATTACCAACTTTTGACCTCAGCACCACAACTCCACCCCAG
GCACCCCAGACCACCACCTATTACCCAGAGAGAAGTACAACCTACTTCCCTGAAACCAAC
CCCCCCTTTATCCCCCAAACAGCCCCACCTTTTGTAATTGAAACAGTCCCACCCCCCTTT
GTACCCCAAACCACCCCACCCAAGCCCCTTGTCACGAACCCCCCAGGTCCCAGGTTATGC
CGTGCTGACCAAGCTACATGCCGTAATGGCCAATGTATCGACCGAAGCTACATTTGTGAC
GGCACTGCTGATTGTTTGGATGGAAGTGATGAACCTCCTACTTGTGCTGTAACCAACAAT
TGTGATCCTACGGAGTTCTTATGCGTTGGCACGGGTGTTTGTGCACAGAAGACATGGAGA
TGTGATGGCGATAATGATTGTGGGAATAATTATGATGAAACAAACTGCCCCACAGCATCC
CCAGATGCAGCTTGTCCTAGCATGCACTTCCAATGCAACAGTGGTGCATGCATTCCTTCA
AGTTATCAATGCGATAATGAACGTGACTGTGATGATGGATCAGATGAAAATAACTGCAGA
CCTCCGGTGGTAGTTTCTCCACCAGAAAGATTTGTTAACGCAACACAAGGTGACACTGTT
GAGTTGTTCTGCGAAGCCGTAGGGGTTCCCACCCCCATTATATCATGGAGGGTGAACTGG
GGTAACGTACCACCCCCACCCCGGGTTACCATGACAACCGTTGGAGGGAAAGGAGTTCTA
ACTATAAGGAAAGTAAAGAAAAGTGACCAGGGAGCTTACACATGTGAAGGGATTAATTCC
CAAGGAGCAATATTTGGTCGTCCTGATGCGATCTTGCAAGTTACTGAGGGTGGCATTGAG
AATGGAGGTTCAGAGATAGGATGCCCAGAAGGTCAGTTCAGTCCAACTGGAAGTCTTGAT
GATTGTACAGCATGTTACTGCTTTGGTGTTACCGACCAATGCTCTGCAAGTAAACTGGAG
TTTACTGAGATTGGTATTGAATTCACGCAACCAGATGACGACCAGGGTGTCACTCTTGAA
CCAAAGGAAAAATCTACGAACGGTGGTCCCCCTCCCGACCTACCTGTCACATCAAACCAA
ATCTTTACCAACCCAGCAGCTAAAGAACTTCAACTGATCGATTTATCGAAAAGATTTCTT
GCAGCTGCTCACTATTGGAGCTTGCCTGCACAGTTTGTGGGAGCTAAGATCAACAGCTAT
GGTGGAACATTAGAGTTTTCCTTTAGTTATAACAACTCCTACAACTTTACCCCACGACCC
ACTAATGCAAGTGATGTAATATTGGAAGGTAATGGAAAGACATTGGTTTACCATCATGAT
GGACCCGCACCTAAACCGGGAGTGAAGAACCAAGCAAATGTTTTGCTTACTGAGGATAAA
TGGAAGAATGAAGATGGAAGTGATGTGAGTCGTGAAGACATGCTGGGTGTGCTCGCTAAT
GTCGATCGGATATTACTAAGGACTGTTTATGATAACTCTATGTTAAGTACTGGAATTGGT
GATGTAAAACTGCAAGTAGCACGAGCACCATCCCCTAAGTTACCAGGTGAAGAACAACCA
GCTGGATCACTTGCATCAATGGTGGAGGAATGTGAATGCCCACCTGGATATACTGGCTTG
TCTTGCGAGCTTTGTGACGAGGGTTACATCAGAATGAGAGCGGGTCCCGTATTGGGTCGT
TGTGTGCGAGAAACCCCAGCCATACCCATATGTGATACGGGGTACACTGGCCCCGAATGC
ACCGAATGTGAGGAGGGCTACACCCCATTTGAAGGAGGTTGCACGAGGTACCCTGGGACT
TACTGTGATGTGGCAGGAAGCATTGGAGTTGGGGTTGGTCGGCAATGTAAATGCAAGGCC
GGCTGTGAAGGTCCACGTTGCAACAAATGCAAACCTGGTTTCTACTACTTGTCGCAAGAC
AATCCTGATGGATGCAAACCATGTTTCTGTATGGGTGTCGCCGATACTTGTGAAAGTTCT
ACATGGAACAGAACACAGGTGTCGCCGAGTTTTCGAAGTGGGGATTATTTCATCCTGACC
AATCGGCTTCAAGCGTCACGCTTCCATGATCACATCACGTACGTTAAGTCACTAGATGGC
ACTAGACAACCTGTGGTCACCGCCCACTTGAACCTGCTACCATTAGATGTTTATTACTGG
ATGCTGCCTGAAGAGTTTGTGGGGAATAAGATCACATCATATGGAGGAAGATTGGACTTC
ACGATCAACTACAGTGAGATCGAGGGTGCGCGACCTATCACTAGAATCGCGATCGCAAAA
ATCACAGGAAATGGAATCACGCTGGTTCATATGAGCGACACTCATCCACCACCAGATCGT
GATACAAGATTCGTGATTGAGATGGTTGAGAGCAAATGGCAGAAAGCTGACACCAGCGAG
GCCACCAGAGAGGAATTAATGATGGTCTTATCAAATGTTGAATCTTTCCTTGTACGTGCT
ACATTCTCGAACCGTGTACAGACCACAAGCATATCAAACATCTATCTTGAAGTTGCATCT
CCTCAACACACAGGAAGGGGTAGGGCTTATAAAGTGGAGCAATGTTCGTGCCCACCTGGA
TATACTGGTCTGTCTTGTGAGGAATGTTCGAATGGCTACCATAGAATAGATGGTGAATAC
CTGGGTACTTGTGTCAAGTGTGATTGTAATGGACATAGTAACACATGTGATAAAACGACT
GGAGTTTGTAATCATTGTCGACACAACACAGCGGGTGACCATTGTGAGCAGTGTGACTAT
GGTTACTATGGTGATGCGCGTGGTGGGGCTGAGGGTTGCCAACGATGTCCGTGCCCGCTC
ATTCGAAACGACATTGTTACATGTCATGTGACAAGAGGAGGGGAACCAGTGTGTGATAGA
TGTCCACCTGGGTATAGTGGAAATATATGCAACTTGTGTGCCCCTGGTTATGAGGAGGTT
TCAAACTCCCCTGTGTTGGTTTGCCAACTATCTGATGATTCATCGTGTAGATGCGATCCA
TCAGGTTCAACTGGTGATACGTGTGATGAGAATGGACAGTGTAACTGTAAGGCGAGTGCA
ACAGGCAAGAGATGTGATGAATGTAAACCTGGTTATTATTATCTGAGTGTTGATAATGAA
GAAGGAGGTTGCTTGCCTTGCTTCTGTATGGGAATCACCACTGACTTCAGTGAAAACTTT
GGTAGTTTTTCGTTGACGGACAGATTACAACGTAGCTCTGTTACTGATGGATTTGAGGTC
ACGAATAGGGGTGGTAGCATTTCACATCCACGACTTGACACTCTGCAACGTGGCACCTCA
TATTACTGGGTACTACCTGAGGAATATAAGGGTGATAAGATTGTGTCTTACGGTGGAAAG
CTTCAATACACTGTCACATATACAACATATGCACAAGGTGTACAACTACATGATTCTGAT
GTCATAATCACTGGTAATGACATCACACTGCTGTCAACTGGTAGCGATTCTGCTGTTGTT
CCTAACCGACCTACTGAGAAAGTTATTGTGTTTCGCGAGGCCAATTGGAAGAGAGCTGAC
GGACAGCCAGCCACACGTGAGCATCTTCTCATGGTCCTCGCTGATGTTGAAACGATCCTC
ATAAGAGCAACATTCTCCTCCTCGATGCTCCGTACATCCCTCTCTTCCATCTCCATGGAA
ACAGCGAGTGAGAGTGTCCTGATGACGGAGCCAGCTATGGAGGTCGAACAATGTGTTTGT
CCTGCTGGGTATGAGGGGTTGTCTTGTGAGGATTGCGCACCAGGCTTTACTAGATCAGGA
GGGGGCATCTACCTTGGCTTGTGTCATTCATGCCAATGTAATGGACATTCTGACCAGTGT
GACTCAGAAACTGGAGTTTGCCAGAGTTGCCGTGACAACACATCAGGCGACCGATGTGAG
CAATGTAATGTCGGATATTTTGGTGACGCAACACAAGGCACACCTGCTGATTGTCGTCTA
TGTGCTTGCCCTGGTTATGGGGATAACAGTTTCTCAGACACTTGTGAATATAACACGGAT
TCTAGAAACCTCGTTTGCACGAACTGTCGCGAGGGACACGTGGGTGACAGGTGTGAACGA
TGTGCACCGGGGTACACGGGGAACCCCCAGGACGAAGGGGGTGAATGTGTTAGACGAGCT
GAGCCTGTTGTTGGGAGCCACCCAGTGGTGAAAGTGTCACCGAAGCGAGTTAACGCAAGA
AGGGGGGCAAGCGTCACCGTTCAATGTGAGGTGAACTCCCCCTACCCCACCATAGTGGAA
TGGTACAAAGGAACCTCATCGTCACGATTATCCTTACCTCCCACTGCTACCATATCGAAC
AATGGACACACACTCACTTTTGCGAGATTTGGCCGAAATGAGGCCGGCACTTACGTATGT
ATCGCACACAACAACTATGGGGTGGGGAGCGACACTACAGTGCTACTCATTGCAAGAGAA
CGACCAATGATAAAAGTTCGAGTTGAGGAACCACGTCGTATAACTACTAGACCTGGCTCA
CAAGCTACATTTGTGTGTACTGCTACTAGCAAGATGCCAGCTTATATCGTATCATGGACC
AAGCGTGGTGGAATGCTCCCTCTTTCCCGTGCTACGGATTACAATGGTATTCTCCATATA
CGAGACCTCAGACCCTCCGATGCTGGCACTTATGTGTGCACTGGCTCCAATATGTACACT
ACTGATTCTGAAACGGCAACACTAGAAGTTATTGGAGGTTAGGCAACACTGAAATAGAAC
CCTTTGCATATTTTGCCTGCGTGTGCGTTTTAGTGTTTCCTATCACTTTTCTAAAACGTT
GTCATTTTAATGTGTTTCTAGTTTACTAATGTCAGTGTAAAACTTATTTGGAAACACTGC
AAAGTTTGTGTGTAGTTTTAGTTGCATGAATGTATGTGAAATATCAGCATATTTATTTCT
TTATATTCAATCCTTTCACAAAATATGATATTTTTATGTCAAAAATATGTTTTCATTAAT
CCTTAAACAGCATTTCTTAAAGTAATTTTGCCAAGATTACTACCCAGTGTTTCCCGCAAA
ATTTTACGCATACCTAATTCATGTTATGGTAAACTTTGGCCAGGAGCTGTGGGCAACACT
GAGCAGAATCAATGCATGTGCTTGAGTGGTATGGGTATGGGGCTAACCCGTGTTATTGAA
AGCAATAATCCAAATGAAAACATTGTGCCTGCCTAGTTTTGAACCCAGTTTTACGGTAGC
ACCTTGGGACCTGGGTAGTATAGACCTATAACCTAAGTCTCGGTGTCTAGAAACTGCCTC
AGTGGGGTCCTGTTGTTAGTACCTTGTCCCTGACCCTTATAGAATCTGCATAGGAATTTT
TTGCAGTATAATCAATTGGGAAATAAGCCATTAGACCAATACTAGTGTATTATGTATTAG
ATTCCATATAAATATATAACAAGCACAGCATGTGTATCTGCATGTGTATGTTGTGTGTGT
GCATGAATATGCATGGATGTGGTGGGTAGCAGTTTAGTGCCAGCAGCTTAAAAGCAATCT
AATAGCGTTGATATTTCAAAGGGGCAATACATAAGATCCCCCTTTTTTTTACCCACAATG
AGGCATAACACGCTGAAGTGAGTTATAACTTAGTAGATACATGAGCTTATGCAATTCTGG
CTTGGCACATTTGCAATTGGAGCAAAGTTATTATCGGCTTTCATATAAAATCTGCTGCCA
TAAAATATTTGAGAAACATTTAACTGGTGAAACTAATTAACAAATGCAATAATTCCTGTT
GCAAACTATGCTGCCTGGCTGCTAATACATAGAGAAGTAATCTTAATTAAGTGCGCTTGG
TTTAATTGCTGTAATCAGATTTAAAAGTCACAACGCTTGAATTTTACCTGAAATTTTGGT
GGCGTTTTGTCAAATAACTTTAAATTTGAGAAAGTCTGTGACATGGCATTAATACTAATT
ATAATTTAACATCCAATGCTACTATGGTGCTTAAAAAACATGGGTTTCTGATCGGTTTCA
ATACAAATGTAACAGCCAATACCTTGCTTAAACTTCATCATCACTTTTATTTTTATACTT
ATTTGTTTGAAAATGGGTACAACTCTGTCTAACAAAGTTACATGCACTGTAACCTGTAAG
CAGGCATTCGTGTATAAAACAGAACACCCGTGTTAAAACGAGTGTTGTTGCCCTGCCATG
CAAGGAGTAATAAGTAACATTCATTCATATACATGGGCTGTTATGTTTGTATTGAAACTA
ACAGAATCTTCTGCTGTTTTCAAAGGTTACGCAAAGTACCTTAACATTGACAAACCACAC
ATACTTTTACAAAATGCCACCTTGAAATTTAAGGTTTAGAGACACACTTAAGCAATAGAA
CTTTGTAGCAAAAACCACATTTCACATTTTTTTAAATCTAGTTTTGATACAGGAACTGTT
CTTGTAACTGTTTATTTTTGCCATTTAAAATTTTTCAAAATAACTTTATTTTTTCTGTGT
TTTAGTTTTTTGAACCTGTTTAAACTTCACCAGCTAAGTTATTGTATTAATACAGTGCAG
CAGTTTAATATGTTAGCCAATTCTAGCTTTTCCTATTCACTGAATATTGTTGCGCAAAAT
ATGTTCGCGTAAAAATACACCAAAGTGGAAAAA

InterProScan

SUPERFAMILY
LDL_receptor-like_sf (IPR036055) - T[297-333] 4.19E-10 - T[340-377] 1.18E-8 - T[384-425] 1.83E-11
SMART
LDrepeatLR_classA_rpt (IPR002172) - T[299-337] 1.3E-12 - T[340-378] 6.1E-11 - T[384-421] 7.5E-13
ProSiteProfiles
LDrepeatLR_classA_rpt (IPR002172) - T[299-336] 12.812 - T[340-377] 12.387 - T[384-420] 13.963
SMART
EGF-like_dom (IPR000742) - T[299-336] 28.0 - T[384-420] 210.0 - T[1135-1174] 84.0 - T[1187-1229] 95.0 - T[1237-1285] 73.0 - T[1519-1559] 64.0 - T[1574-1617] 31.0
Pfam
LDrepeatLR_classA_rpt (IPR002172) - T[300-335] 2.8E-10 - T[340-376] 2.6E-7 - T[384-419] 1.6E-12
CDD
LDrepeatLR_classA_rpt (IPR002172) - T[300-331] 1.83988E-9 - T[341-376] 1.96594E-8 - T[385-419] 4.08405E-12
PRINTS
LDrepeatLR_classA_rpt (IPR002172) - T[310-331] 2.3E-20 - T[352-373] 2.3E-20 - T[395-416] 2.3E-20
ProSitePatterns
LDLR_class-A_CS (IPR023415) - T[397-419] .
Gene3D
Ig-like_fold (IPR013783) - T[420-518] 2.0E-17 - T[1625-1717] 5.2E-14 - T[1718-1810] 3.5E-20
SUPERFAMILY
Ig-like_dom_sf (IPR036179) - T[420-504] 1.31E-18 - T[1627-1717] 1.27E-14 - T[1728-1810] 2.52E-17
ProSiteProfiles
Ig-like_dom (IPR007110) - T[421-495] 12.187 - T[1628-1716] 11.769 - T[1722-1809] 12.876
SMART
Ig_sub (IPR003599) - T[429-515] 9.3E-8 - T[1634-1718] 2.7E-9 - T[1731-1811] 9.2E-13
SMART
Ig_sub2 (IPR003598) - T[435-502] 4.0E-10 - T[1640-1707] 2.5E-6 - T[1737-1800] 2.3E-9
ProSiteProfiles
Laminin_IV (IPR000034) - T[572-770] 32.924 - T[912-1094] 33.495 - T[1298-1477] 37.511
SMART
Laminin_IV (IPR000034) - T[620-749] 2.5E-32 - T[954-1081] 3.3E-37 - T[1337-1464] 1.3E-51
Pfam
Laminin_IV (IPR000034) - T[625-752] 5.7E-32 - T[959-1093] 3.4E-33 - T[1342-1476] 4.3E-36
Pfam
Laminin_EGF (IPR002049) - T[770-793] 0.008 - T[842-885] 8.1E-5 - T[1094-1117] 0.0024 - T[1127-1173] 5.7E-9 - T[1176-1222] 0.017 - T[1236-1284] 6.0E-9 - T[1477-1498] 0.0024 - T[1511-1558] 4.0E-9 - T[1561-1616] 4.7E-6
SMART
Laminin_EGF (IPR002049) - T[771-834] 3.7 - T[838-885] 0.28 - T[1094-1124] 4.8 - T[1127-1173] 8.0E-10 - T[1176-1228] 0.29 - T[1236-1284] 1.2E-10 - T[1477-1508] 8.2 - T[1511-1558] 9.6E-10 - T[1561-1616] 8.4E-8
ProSiteProfiles
Laminin_EGF (IPR002049) - T[841-887] 12.597 - T[1127-1175] 19.147 - T[1176-1230] 6.98 - T[1236-1286] 17.434 - T[1511-1560] 17.338 - T[1561-1618] 12.483
ProSitePatterns
Laminin_EGF (IPR002049) - T[856-890] . - T[1254-1289] . - T[1527-1563] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
LAMA1_HUMAN 35.088 % 295 2.63E-80
LAMA2_HUMAN 36.731 % 308 2.09E-84
PGBM_HUMAN 38.3 % 1204 0