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TRANSCRIPT CARD

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  1. EST 'AHC0AAA226YN04_RM1' > 
  2. Transcript 'Haaura.CG.MTP2014.S2...' > 
  3. Transcript 'KH2012:KH.C3.21.v3.B...'

Transcript Model

Transcript Id

KH2012:KH.C3.21.v3.B.ND3-3

Possible name(s)

HMCN1; HSPG2; LAMA2

Gene model

KH2012:KH.C3.21

Location

KhC3 [6,310,735 / 6,311,648]

Sequences

Amino acid sequence

Length: 117

>KH.C3.21.v3.B.ND3-3
SMKLVEGTSYSISCSSSDVLPVSYSWMKESGEMSSTVLTSGGRMQITSFNPNTDVGRYTC
KGLNDAGVATVTLTITAAKPPVATISPQEVTKEVGSSVKFVCSVQNNENNAIVWKK+

Nucleotide sequence

Length: 350

>KH2012:KH.C3.21.v3.B.ND3-3
CCAGCATGAAGTTAGTTGAAGGAACATCATATTCAATATCTTGCTCATCATCTGATGTAT
TGCCTGTATCTTATTCTTGGATGAAGGAATCTGGTGAAATGTCTAGCACTGTACTGACAT
CTGGTGGTCGAATGCAGATAACGAGTTTCAACCCCAATACTGACGTTGGTCGATATACTT
GCAAGGGTTTAAACGATGCTGGGGTTGCCACGGTTACTCTTACTATAACTGCTGCAAAAC
CACCTGTCGCTACCATCTCACCACAAGAGGTCACCAAAGAGGTTGGTTCATCTGTTAAGT
TCGTTTGTTCCGTCCAAAACAATGAAAACAATGCCATCGTGTGGAAAAAA

InterProScan

ProSiteProfiles
Ig-like_dom (IPR007110) - T[1-76] 10.553 - T[80-116] 7.558
Gene3D
Ig-like_fold (IPR013783) - T[1-85] 4.2E-12
SUPERFAMILY
Ig-like_dom_sf (IPR036179) - T[3-106] 8.06E-13
SMART
Ig_sub2 (IPR003598) - T[5-67] 0.0093

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value