- Transcript 'KH2012:KH.C3.110.v1....'
Transcript Model
Transcript Id
KH2012:KH.C3.110.v1.A.SL2-1
Possible name(s)
GPSM2; RAPSN; TTC28
Gene model
Location
KhC3 [3,070,556 / 3,074,410]
Amino acid sequence
Length: 446
>KH.C3.110.v1.A.SL2-1
KTVRLSILDDSVALDETYDRVERMLRNFCDTNEEKEILSCWEKAVSKKCRNPLQLWSAFG
LAMRALENWGKHRSFLAFSIRQVELSQEFERSSDLFAGMDSVNSAILVADSYLNMAKGNL
LMSQYKNSEKYATKCLSVLCSVRKSNLNAIKLSGYAYLYKARSNLGFSNFRNALEDLERS
LRVAHDQEDRRLECFACCAMGALYLQLKDYEKGNFFSIKSCEIWTQCGSSWSTRTKVTTQ
LNLAEAYRKVGKIEDAMVIGEEAMKIAIENDDRSCQAYAMLCFADIHRVRKDEERSLPRY
NSASGLMLDTGDQYGYMMSTIGKAKLYLQTKDYQKAIQEYFAGQKIAEAIGNKITSMHIH
GELALLFQRLSNQDEARVRTLRYHRLLETMELFCGICAEPMAEKNEQLEALPCSHFFHLK
CVSNNDALEMRMCPSCQKKPMKQATL
Nucleotide sequence
Length: 1,929
>KH2012:KH.C3.110.v1.A.SL2-1
CAAGACGGTGAGACTAAGTATATTGGATGATAGTGTTGCATTGGATGAGACATATGACAG
GGTGGAACGAATGCTGAGGAACTTTTGTGACACTAACGAAGAAAAAGAAATACTAAGCTG
TTGGGAGAAGGCAGTAAGCAAGAAGTGTCGTAACCCGTTACAACTGTGGAGTGCGTTTGG
TTTGGCGATGCGGGCGCTTGAAAACTGGGGAAAACATCGGAGTTTTCTTGCATTTTCAAT
TCGACAGGTCGAGTTATCGCAAGAGTTTGAAAGGTCCAGCGATTTGTTCGCTGGTATGGA
TTCTGTCAACAGCGCAATTCTCGTTGCCGATTCATATTTAAATATGGCAAAGGGGAACCT
TCTGATGTCTCAATACAAGAACAGCGAAAAATACGCCACCAAGTGCCTGAGTGTGCTTTG
CTCCGTCCGAAAAAGCAACCTCAATGCTATCAAATTGAGTGGTTATGCATACTTGTACAA
GGCAAGATCGAATTTAGGCTTTAGTAACTTCAGAAATGCCCTTGAAGACTTGGAGCGATC
GCTCCGTGTGGCTCACGACCAAGAGGACAGAAGACTTGAGTGTTTTGCTTGTTGTGCTAT
GGGTGCTTTGTATCTACAGTTGAAAGACTACGAAAAGGGAAATTTCTTCTCCATAAAATC
GTGTGAGATCTGGACACAATGTGGATCAAGTTGGAGCACACGCACCAAAGTCACCACTCA
GTTGAATCTCGCTGAAGCTTACAGGAAAGTGGGGAAGATAGAAGACGCCATGGTGATTGG
TGAAGAGGCGATGAAAATAGCGATCGAAAACGACGATCGGTCATGTCAAGCTTACGCCAT
GTTGTGTTTTGCTGATATACATCGTGTAAGGAAAGATGAAGAAAGATCGTTACCAAGGTA
TAACTCAGCATCAGGGCTCATGCTGGATACGGGCGACCAGTACGGATACATGATGTCAAC
TATAGGAAAAGCTAAATTGTATCTGCAGACGAAAGATTATCAAAAGGCAATCCAAGAATA
TTTTGCGGGTCAAAAAATAGCTGAAGCTATTGGCAACAAGATTACATCCATGCATATCCA
CGGTGAACTGGCTCTCTTGTTTCAACGATTATCCAACCAAGACGAAGCGAGAGTGAGAAC
CCTAAGATATCATCGACTTCTCGAAACTATGGAACTGTTTTGCGGTATATGCGCTGAACC
GATGGCGGAGAAAAACGAACAGCTTGAAGCTCTTCCATGCTCGCATTTTTTCCACTTGAA
ATGTGTTTCTAATAACGACGCTTTGGAAATGCGGATGTGTCCTAGTTGCCAGAAGAAGCC
AATGAAGCAAGCCACTCTTTGACGTTTCCATTTCCCAATACCAACCATATGTTTATATTC
CTTGCTATATAATCAAGCAGTTGTTGTTTATGATACGACGGTAACGTGGGTGTCAGATAT
TTCAGTATAAGTTTTATATAGCAGGAACTATAGTCTCACTCGCCGGAAGTTGTACAGTAT
TATTAGCGGAGTAGTTTTAGTTTAACTACTTTTTCACTAAACATAGGTTTCGTAAACAGG
GGTTGCAACAAGCTGTCTGCACAGACTTGCTGTAGTACCATGTGGGAAAGTTGCTGGGAT
GCCGTTTAGTATACTAAGTATAGTAGATGGGGGAAGACGGGACACCTTTAGCACATAATA
TCCGAATATCCTGATTGTGTTTTAAACAAGTAACAACGGTCTATGGGGGTCGTGAGGATA
CGGTTTTATAAAGCAAATGGGACGAGAAAATGGAGTAAAAAGGTGTCCTATCTTCCCCCA
CCATACTATACATAAAAAACATATTCTTTTCCAAAATTGTTAAAGGTGAGTTACTATGGT
TTAAATCGCAGTTCTAATCTATGAGATTTTATCCGATGTCATAAACCCCAATATACAATC
GTTCAGTTT
| Gene3D |
TPR-like_helical_dom_sf (IPR011990) - T[13-233] 2.9E-11 - T[234-382] 9.1E-16 |
| Pfam |
Rapsyn_myristoylation/link_N (IPR019568) - T[15-90] 2.1E-7 |
| SUPERFAMILY |
TPR-like_helical_dom_sf (IPR011990) - T[108-213] 8.72E-7 - T[231-378] 1.46E-15 |
| SMART |
TPR_repeat (IPR019734) - T[109-142] 160.0 - T[154-187] 45.0 - T[237-270] 2.7 - T[317-350] 150.0 |
| Pfam |
Apc5_dom (IPR026000) - T[154-191] 11.0 - T[239-285] 0.013 |
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[383-442] 9.6E-8 |
| Pfam |
Znf_RING (IPR001841) - T[394-422] 3.1E-7 |
| SMART |
Znf_RING (IPR001841) - T[394-436] 5.1E-5 |
| ProSiteProfiles |
Znf_RING (IPR001841) - T[394-437] 11.014 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RAPSN_HUMAN | 34.579 % | 281 | 5.6E-91 |