- Transcript 'KH2012:KH.C2.201.v2....' >
- Region 'REG00000105' >
- Molecular Tool 'mesp::FoxF-WRPW' >
- Transcript 'KH2012:KH.C3.110.v1....'
Transcript Model
Transcript Id
KH2012:KH.C3.110.v1.A.SL1-1
Possible name(s)
GPSM2; RAPSN; TTC28
Gene model
Location
KhC3 [3,070,487 / 3,074,410]
Amino acid sequence
Length: 468
>KH.C3.110.v1.A.SL1-1
LWCVNCMQIKTFKMGQFQSINSKTVRLSILDDSVALDETYDRVERMLRNFCDTNEEKEIL
SCWEKAVSKKCRNPLQLWSAFGLAMRALENWGKHRSFLAFSIRQVELSQEFERSSDLFAG
MDSVNSAILVADSYLNMAKGNLLMSQYKNSEKYATKCLSVLCSVRKSNLNAIKLSGYAYL
YKARSNLGFSNFRNALEDLERSLRVAHDQEDRRLECFACCAMGALYLQLKDYEKGNFFSI
KSCEIWTQCGSSWSTRTKVTTQLNLAEAYRKVGKIEDAMVIGEEAMKIAIENDDRSCQAY
AMLCFADIHRVRKDEERSLPRYNSASGLMLDTGDQYGYMMSTIGKAKLYLQTKDYQKAIQ
EYFAGQKIAEAIGNKITSMHIHGELALLFQRLSNQDEARVRTLRYHRLLETMELFCGICA
EPMAEKNEQLEALPCSHFFHLKCVSNNDALEMRMCPSCQKKPMKQATL
Nucleotide sequence
Length: 1,998
>KH2012:KH.C3.110.v1.A.SL1-1
ATAATTATGGTGTGTTAACTGTATGCAAATAAAAACCTTCAAAATGGGACAATTCCAATC
AATTAATAGCAAGACGGTGAGACTAAGTATATTGGATGATAGTGTTGCATTGGATGAGAC
ATATGACAGGGTGGAACGAATGCTGAGGAACTTTTGTGACACTAACGAAGAAAAAGAAAT
ACTAAGCTGTTGGGAGAAGGCAGTAAGCAAGAAGTGTCGTAACCCGTTACAACTGTGGAG
TGCGTTTGGTTTGGCGATGCGGGCGCTTGAAAACTGGGGAAAACATCGGAGTTTTCTTGC
ATTTTCAATTCGACAGGTCGAGTTATCGCAAGAGTTTGAAAGGTCCAGCGATTTGTTCGC
TGGTATGGATTCTGTCAACAGCGCAATTCTCGTTGCCGATTCATATTTAAATATGGCAAA
GGGGAACCTTCTGATGTCTCAATACAAGAACAGCGAAAAATACGCCACCAAGTGCCTGAG
TGTGCTTTGCTCCGTCCGAAAAAGCAACCTCAATGCTATCAAATTGAGTGGTTATGCATA
CTTGTACAAGGCAAGATCGAATTTAGGCTTTAGTAACTTCAGAAATGCCCTTGAAGACTT
GGAGCGATCGCTCCGTGTGGCTCACGACCAAGAGGACAGAAGACTTGAGTGTTTTGCTTG
TTGTGCTATGGGTGCTTTGTATCTACAGTTGAAAGACTACGAAAAGGGAAATTTCTTCTC
CATAAAATCGTGTGAGATCTGGACACAATGTGGATCAAGTTGGAGCACACGCACCAAAGT
CACCACTCAGTTGAATCTCGCTGAAGCTTACAGGAAAGTGGGGAAGATAGAAGACGCCAT
GGTGATTGGTGAAGAGGCGATGAAAATAGCGATCGAAAACGACGATCGGTCATGTCAAGC
TTACGCCATGTTGTGTTTTGCTGATATACATCGTGTAAGGAAAGATGAAGAAAGATCGTT
ACCAAGGTATAACTCAGCATCAGGGCTCATGCTGGATACGGGCGACCAGTACGGATACAT
GATGTCAACTATAGGAAAAGCTAAATTGTATCTGCAGACGAAAGATTATCAAAAGGCAAT
CCAAGAATATTTTGCGGGTCAAAAAATAGCTGAAGCTATTGGCAACAAGATTACATCCAT
GCATATCCACGGTGAACTGGCTCTCTTGTTTCAACGATTATCCAACCAAGACGAAGCGAG
AGTGAGAACCCTAAGATATCATCGACTTCTCGAAACTATGGAACTGTTTTGCGGTATATG
CGCTGAACCGATGGCGGAGAAAAACGAACAGCTTGAAGCTCTTCCATGCTCGCATTTTTT
CCACTTGAAATGTGTTTCTAATAACGACGCTTTGGAAATGCGGATGTGTCCTAGTTGCCA
GAAGAAGCCAATGAAGCAAGCCACTCTTTGACGTTTCCATTTCCCAATACCAACCATATG
TTTATATTCCTTGCTATATAATCAAGCAGTTGTTGTTTATGATACGACGGTAACGTGGGT
GTCAGATATTTCAGTATAAGTTTTATATAGCAGGAACTATAGTCTCACTCGCCGGAAGTT
GTACAGTATTATTAGCGGAGTAGTTTTAGTTTAACTACTTTTTCACTAAACATAGGTTTC
GTAAACAGGGGTTGCAACAAGCTGTCTGCACAGACTTGCTGTAGTACCATGTGGGAAAGT
TGCTGGGATGCCGTTTAGTATACTAAGTATAGTAGATGGGGGAAGACGGGACACCTTTAG
CACATAATATCCGAATATCCTGATTGTGTTTTAAACAAGTAACAACGGTCTATGGGGGTC
GTGAGGATACGGTTTTATAAAGCAAATGGGACGAGAAAATGGAGTAAAAAGGTGTCCTAT
CTTCCCCCACCATACTATACATAAAAAACATATTCTTTTCCAAAATTGTTAAAGGTGAGT
TACTATGGTTTAAATCGCAGTTCTAATCTATGAGATTTTATCCGATGTCATAAACCCCAA
TATACAATCGTTCAGTTT
| Gene3D |
TPR-like_helical_dom_sf (IPR011990) - T[28-258] 2.0E-11 - T[259-410] 1.8E-15 |
| Pfam |
Rapsyn_myristoylation/link_N (IPR019568) - T[37-112] 2.3E-7 |
| SMART |
TPR_repeat (IPR019734) - T[131-164] 160.0 - T[176-209] 45.0 - T[259-292] 2.7 - T[339-372] 150.0 |
| Pfam |
Apc5_dom (IPR026000) - T[176-213] 12.0 - T[261-307] 0.014 |
| SUPERFAMILY |
TPR-like_helical_dom_sf (IPR011990) - T[176-294] 2.4E-7 - T[255-400] 2.28E-15 |
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[411-467] 9.9E-8 |
| ProSiteProfiles |
Znf_RING (IPR001841) - T[416-459] 11.014 |
| Pfam |
Znf_RING (IPR001841) - T[416-444] 3.3E-7 |
| SMART |
Znf_RING (IPR001841) - T[416-458] 5.1E-5 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RAPSN_HUMAN | 34.579 % | 281 | 1.2E-90 |