- Transcript 'KH2012:KH.C3.110.v1....' >
- Molecular Tool 'FoxF MO (Christiaen's MO)' >
- Molecular Tool 'mesp::FoxF-VP16' >
- Molecular Tool 'CCnb3 MO (Treen 2018)' >
- Transcript 'KH2012:KH.C3.110.v1....'
Transcript Model
Transcript Id
KH2012:KH.C3.110.v1.A.nonSL4-1
Possible name(s)
GPSM2; RAPSN; TTC28
Gene model
Location
KhC3 [3,070,551 / 3,074,410]
Amino acid sequence
Length: 448
>KH.C3.110.v1.A.nonSL4-1
NSKTVRLSILDDSVALDETYDRVERMLRNFCDTNEEKEILSCWEKAVSKKCRNPLQLWSA
FGLAMRALENWGKHRSFLAFSIRQVELSQEFERSSDLFAGMDSVNSAILVADSYLNMAKG
NLLMSQYKNSEKYATKCLSVLCSVRKSNLNAIKLSGYAYLYKARSNLGFSNFRNALEDLE
RSLRVAHDQEDRRLECFACCAMGALYLQLKDYEKGNFFSIKSCEIWTQCGSSWSTRTKVT
TQLNLAEAYRKVGKIEDAMVIGEEAMKIAIENDDRSCQAYAMLCFADIHRVRKDEERSLP
RYNSASGLMLDTGDQYGYMMSTIGKAKLYLQTKDYQKAIQEYFAGQKIAEAIGNKITSMH
IHGELALLFQRLSNQDEARVRTLRYHRLLETMELFCGICAEPMAEKNEQLEALPCSHFFH
LKCVSNNDALEMRMCPSCQKKPMKQATL
Nucleotide sequence
Length: 1,934
>KH2012:KH.C3.110.v1.A.nonSL4-1
AATAGCAAGACGGTGAGACTAAGTATATTGGATGATAGTGTTGCATTGGATGAGACATAT
GACAGGGTGGAACGAATGCTGAGGAACTTTTGTGACACTAACGAAGAAAAAGAAATACTA
AGCTGTTGGGAGAAGGCAGTAAGCAAGAAGTGTCGTAACCCGTTACAACTGTGGAGTGCG
TTTGGTTTGGCGATGCGGGCGCTTGAAAACTGGGGAAAACATCGGAGTTTTCTTGCATTT
TCAATTCGACAGGTCGAGTTATCGCAAGAGTTTGAAAGGTCCAGCGATTTGTTCGCTGGT
ATGGATTCTGTCAACAGCGCAATTCTCGTTGCCGATTCATATTTAAATATGGCAAAGGGG
AACCTTCTGATGTCTCAATACAAGAACAGCGAAAAATACGCCACCAAGTGCCTGAGTGTG
CTTTGCTCCGTCCGAAAAAGCAACCTCAATGCTATCAAATTGAGTGGTTATGCATACTTG
TACAAGGCAAGATCGAATTTAGGCTTTAGTAACTTCAGAAATGCCCTTGAAGACTTGGAG
CGATCGCTCCGTGTGGCTCACGACCAAGAGGACAGAAGACTTGAGTGTTTTGCTTGTTGT
GCTATGGGTGCTTTGTATCTACAGTTGAAAGACTACGAAAAGGGAAATTTCTTCTCCATA
AAATCGTGTGAGATCTGGACACAATGTGGATCAAGTTGGAGCACACGCACCAAAGTCACC
ACTCAGTTGAATCTCGCTGAAGCTTACAGGAAAGTGGGGAAGATAGAAGACGCCATGGTG
ATTGGTGAAGAGGCGATGAAAATAGCGATCGAAAACGACGATCGGTCATGTCAAGCTTAC
GCCATGTTGTGTTTTGCTGATATACATCGTGTAAGGAAAGATGAAGAAAGATCGTTACCA
AGGTATAACTCAGCATCAGGGCTCATGCTGGATACGGGCGACCAGTACGGATACATGATG
TCAACTATAGGAAAAGCTAAATTGTATCTGCAGACGAAAGATTATCAAAAGGCAATCCAA
GAATATTTTGCGGGTCAAAAAATAGCTGAAGCTATTGGCAACAAGATTACATCCATGCAT
ATCCACGGTGAACTGGCTCTCTTGTTTCAACGATTATCCAACCAAGACGAAGCGAGAGTG
AGAACCCTAAGATATCATCGACTTCTCGAAACTATGGAACTGTTTTGCGGTATATGCGCT
GAACCGATGGCGGAGAAAAACGAACAGCTTGAAGCTCTTCCATGCTCGCATTTTTTCCAC
TTGAAATGTGTTTCTAATAACGACGCTTTGGAAATGCGGATGTGTCCTAGTTGCCAGAAG
AAGCCAATGAAGCAAGCCACTCTTTGACGTTTCCATTTCCCAATACCAACCATATGTTTA
TATTCCTTGCTATATAATCAAGCAGTTGTTGTTTATGATACGACGGTAACGTGGGTGTCA
GATATTTCAGTATAAGTTTTATATAGCAGGAACTATAGTCTCACTCGCCGGAAGTTGTAC
AGTATTATTAGCGGAGTAGTTTTAGTTTAACTACTTTTTCACTAAACATAGGTTTCGTAA
ACAGGGGTTGCAACAAGCTGTCTGCACAGACTTGCTGTAGTACCATGTGGGAAAGTTGCT
GGGATGCCGTTTAGTATACTAAGTATAGTAGATGGGGGAAGACGGGACACCTTTAGCACA
TAATATCCGAATATCCTGATTGTGTTTTAAACAAGTAACAACGGTCTATGGGGGTCGTGA
GGATACGGTTTTATAAAGCAAATGGGACGAGAAAATGGAGTAAAAAGGTGTCCTATCTTC
CCCCACCATACTATACATAAAAAACATATTCTTTTCCAAAATTGTTAAAGGTGAGTTACT
ATGGTTTAAATCGCAGTTCTAATCTATGAGATTTTATCCGATGTCATAAACCCCAATATA
CAATCGTTCAGTTT
| Gene3D |
TPR-like_helical_dom_sf (IPR011990) - T[14-234] 2.5E-11 - T[235-384] 9.3E-16 |
| Pfam |
Rapsyn_myristoylation/link_N (IPR019568) - T[17-92] 2.1E-7 |
| SMART |
TPR_repeat (IPR019734) - T[111-144] 160.0 - T[156-189] 45.0 - T[239-272] 2.7 - T[319-352] 150.0 |
| Pfam |
Apc5_dom (IPR026000) - T[156-193] 11.0 - T[241-287] 0.014 |
| SUPERFAMILY |
TPR-like_helical_dom_sf (IPR011990) - T[157-274] 3.48E-7 - T[233-380] 1.46E-15 |
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[385-444] 9.6E-8 |
| SMART |
Znf_RING (IPR001841) - T[396-438] 5.1E-5 |
| Pfam |
Znf_RING (IPR001841) - T[396-424] 3.1E-7 |
| ProSiteProfiles |
Znf_RING (IPR001841) - T[396-439] 11.014 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RAPSN_HUMAN | 34.579 % | 281 | 5.07E-91 |