- Transcript 'Harore.CG.MTP2014.S1...' >
- Region 'REG00001427' >
- Transcript 'KH2012:KH.L20.1.v1.R...' >
- Region 'REG00000099' >
- Transcript 'KH2012:KH.C2.725.v1....'
Transcript Model
Transcript Id
KH2012:KH.C2.725.v1.A.SL1-1
Possible name(s)
RBPJ; RBPJL
Gene model
Location
KhC2 [1,644,272 / 1,659,980]
Amino acid sequence
Length: 564
>KH.C2.725.v1.A.SL1-1
KNKIWITRFVMYHPHHLPAHGQVQSHQHREDAAATSSRDVNGGLSVTESAIASFRSLREK
YPPKKLTRDAMRRYLKDPNDQTLIVLHAKVAQKSYGNEKRFFCPPPCMYLLGNGWKRKQQ
ILEEEEGSSEAGQLHAFIGIGSSEQEMQQLHLDGKNFCTAKTLYISDTDKRKHFMLNVKM
FFGGGGADVGQFSSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVSTRYLH
VEKGNFHASSIQWGCFAIHLLDDDESESEEFSVVDGYIHYGQTVKLVCSNTGMALPRLII
RKVDKQTAILDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKETNKEMIND
GASWTIISTDKAEYTFCDGMGPTADPVTPVPNVHSLQLNGGGDVAMLEVNGECFTSNLKV
WFGEIEADTMFRCAEGLLCVVPDISAFREGWKWVKESVQVPINLVRNDGVIYPTNLTFTF
TPEPGPRQHCPAALNILHGSKRPSASMPPTPVSGSEDDSGRGNESDRGDPIMPIKRPALD
VHGRPVAPEAAATMNGANMLRTAS
Nucleotide sequence
Length: 2,542
>KH2012:KH.C2.725.v1.A.SL1-1
AAATTTAAGTGTTAAATTGTTGCAGATATCATAAACTGTTTGTTGTAACATTTTGTTGGA
TCTAAAGGACTGGTAAATTCAAATTTTTTGCTGGAACTCTTTGATCAAGCAGAAAACTTT
GGTCACCATATGTTTGCCTGTCGAAACTTTAAAAGAACAAGATTTGGATAACTAGATTTG
TGATGTATCACCCCCACCACCTACCAGCTCATGGCCAAGTTCAGAGTCATCAGCATAGAG
AAGATGCTGCTGCTACATCCAGTAGGGATGTTAATGGTGGATTATCTGTAACAGAATCTG
CCATTGCTTCATTTAGGTCGCTCCGAGAAAAATATCCGCCGAAAAAATTGACAAGGGATG
CGATGCGACGATATTTAAAAGATCCAAACGACCAAACCCTGATTGTGCTTCACGCAAAAG
TTGCGCAGAAATCATACGGAAACGAAAAACGTTTCTTCTGCCCACCACCATGTATGTACC
TGCTAGGCAACGGATGGAAGAGGAAGCAGCAGATCCTTGAAGAGGAGGAGGGATCCTCGG
AGGCAGGACAGTTGCACGCTTTCATCGGGATCGGAAGTAGCGAGCAAGAGATGCAGCAAC
TTCATCTGGACGGAAAGAACTTCTGCACGGCCAAGACATTGTACATATCGGATACAGATA
AAAGGAAGCATTTCATGCTCAACGTAAAGATGTTTTTCGGAGGCGGAGGAGCAGATGTTG
GCCAGTTCAGCAGCAAGAGGATAAAAGTCATCAGCAAGCCATCCAAGAAAAAACAATCAC
TAAAAAACGCAGACCTTTGCATAGCATCCGGCACCAAAGTAGCGCTTTTCAACCGACTCC
GCTCACAGACAGTGAGCACAAGGTACCTGCACGTTGAGAAAGGAAACTTTCATGCCAGCT
CAATTCAGTGGGGGTGCTTCGCCATTCACTTATTGGACGACGACGAGTCAGAATCCGAAG
AGTTTTCAGTAGTGGACGGCTACATACATTACGGACAAACCGTAAAACTCGTTTGTTCGA
ACACTGGAATGGCGCTGCCGAGGCTTATAATACGAAAGGTGGACAAGCAAACAGCGATTC
TTGACGCGGACGACCCAGTATCACAACTACACAAGTGCGCCTTCTACCTAAAAGACACAG
AACGGATGTACCTTTGCCTCTCCCAAGAACGAATCATTCAATTCCAGGCAACCCCGTGTC
CAAAAGAAACAAACAAAGAAATGATCAACGATGGTGCTTCATGGACCATCATATCAACTG
ATAAAGCGGAGTACACCTTTTGTGATGGTATGGGACCAACAGCTGACCCAGTAACACCTG
TACCGAATGTACATAGCCTCCAGTTAAACGGCGGAGGAGACGTGGCCATGCTAGAGGTGA
ATGGTGAATGTTTCACTTCCAACTTGAAGGTGTGGTTCGGTGAAATCGAGGCCGACACGA
TGTTTCGGTGTGCGGAAGGTCTGTTATGTGTGGTGCCCGACATCTCTGCTTTCCGGGAAG
GCTGGAAGTGGGTTAAGGAATCTGTACAGGTTCCCATCAATCTTGTGCGAAACGACGGAG
TGATCTACCCCACCAACCTCACATTCACATTTACCCCTGAGCCTGGACCCAGGCAACACT
GTCCCGCAGCTCTCAACATACTGCACGGTAGTAAGAGGCCGTCAGCATCCATGCCCCCGA
CTCCAGTATCCGGGTCTGAGGACGACAGTGGTCGCGGAAACGAGTCGGATCGCGGCGATC
CGATCATGCCAATAAAACGGCCCGCGCTCGATGTACACGGGAGACCTGTCGCCCCTGAAG
CGGCCGCCACCATGAACGGTGCGAACATGCTTCGTACTGCATCGTGACGTCACTCACCCT
TCTGTGACGTCACAGAAAACGTGTAATGATATGCGCTGGCGAGCTGCCGAGCGAGGAGCG
ACGCCAGCCATGGAATAAAGCAAGGTACATCCCTGGTGCAACCGTCCACGTGAATACATC
CAAACCACGAAAACACGACGAATAAACTGCGAGTAATTTACATGACCATACATAACTGTC
GAAACTATTACCGTCCTGCTACAGTTTACTCGACCAGAGTTACTTCGTTTACTGTTAACG
TGCAAAATGGGCTCTTTTTACCTCAATTGTAACACCGTGCCGCGCAAGACGCAAGGACTT
TTAATCGTATTCTGTCTCCTGGGAATCTTTTTTGTAGCTTGGAACACGAGGCCTTTATGT
TAAAGCGTGGCTAGCTTGCCTGGTTGCTGTTTTTCTTCAATAAATCGCCGCCTTTACCAG
CTTGGGCCACAAAATACACCCCACCCTCCTACCTCGCTCGAAATTCAGCGATGCGAAATT
CTTCTCCTCTCGTGACGTAGCAAGCCGGGAAGTCGAGACCACCAGTTCAACATTTTAGTT
CTTATTTCTTTCTTCTTGTCTTATACCACTTTCCGATTTCAATATTTTTAAAATGTGTCA
ATTTTACAGACGCTTATTTATATACTAGCTTGAGCTAATCGGCAGTGCGACGTCCAACAA
TAAACCAATCAATTCTACAACC
| SUPERFAMILY |
p53-like_TF_DNA-bd (IPR008967) - T[65-214] 5.47E-59 |
| Gene3D |
RBP-J/Cbf11/Cbf12_DNA-bd_sf (IPR037095) - T[66-210] 1.4E-164 - T[369-389] 1.4E-164 |
| SMART |
RBP-J/Cbf11/Cbf12_DNA-bd (IPR015351) - T[82-214] 5.3E-82 |
| Pfam |
RBP-J/Cbf11/Cbf12_DNA-bd (IPR015351) - T[83-214] 4.2E-48 |
| SUPERFAMILY |
BTD_sf (IPR036358) - T[212-369] 3.92E-64 |
| SMART |
Beta-trefoil_DNA-bd_dom (IPR015350) - T[215-364] 1.3E-88 |
| Pfam |
Beta-trefoil_DNA-bd_dom (IPR015350) - T[215-364] 3.7E-72 |
| SUPERFAMILY |
Ig_E-set (IPR014756) - T[370-482] 3.5E-35 |
| CDD |
RBP-Jkappa_IPT (IPR038007) - T[386-482] 2.53936E-61 |
| Gene3D |
Ig-like_fold (IPR013783) - T[391-484] 1.3E-38 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SUH_HUMAN | 78.492 % | 751 | 0 |
| RBPJL_HUMAN | 51.981 % | 470 | 1.01E-161 |