- Transcript 'KH2012:KH.C11.102.v2...' >
- Clone 'man25k17' >
- Transcript 'KH2012:KH.C2.530.v1....'
Transcript Model
Transcript Id
KH2012:KH.C2.530.v1.A.SL1-1
Possible name(s)
SMG5; SMG6; SMG7
Gene model
Location
KhC2 [5,159,728 / 5,175,196]
Amino acid sequence
Length: 1,248
>KH.C2.530.v1.A.SL1-1
FFDQKNTAMASDRLPVVSLNESSLRRLQQKLQKMKESEKLDEAITPSPTTDKKPRQRKPT
RSPKYEVYKPGVTRLSNRRENPSTENAQSFHKTQKDLKSAGREVSASGDKKKVNEDRKPT
SDRRRRREGKRRDANHRSRKSPEENSDESSDMEEGYLARHHRRMGNTRHLSSTSNDGAGE
KTDELEWDNYNHSRLFEPWSEMDQQCDDQQQHEPHTETTGEIFVEEKPKPQNRKQDKKRK
SRKSVELREKPTNKVPHSGRPCYMDDPVSISNEEEEDGTSASNTENETSRQQLNQKKKLY
NPSNPDTPILVKSNRRGCVKVDKMNENIPVYNQEYFSSPRFPAPNPRNLPLDGRRQRTLY
DATTNTNQVYVPPTRPSNYFMPSPVPPEAWKSNDKYAYEMEQRKQQQQQVTMACKALIAD
HMTNIRRQSCVTMLAEAEKHETAISSLLSNSDFTMKNFTEILRKSRNKLKQIYESLILTD
IETASKHNVEQTLWKNVFHQVIEKLREQIASCTEDEKTELKDLLILILDQAVAFYENLVS
GLQQTYRFSIKEMLRNPTVARSVHKQAGKRTKFAIMSVQRSLICLGDITRYKENANDSNN
FGRARNWYMQARALEPRNGRPYNQLAILAVRTRRKLDAVYYYARSLATIGNPILTARESL
IALFDDARRKLEYTRRKEGSKNQKTTVSDQENKATKSKGNNPMQIWCKPGSHHPQESSAS
SKTSATSKESADLTPDIEKLSLSSLTPSEIMKQFSLMFINIHGKLFTRVGFESFHELKQK
VLHLFQQALQCRPPLINSQTLQHVMAINYFSVFDQQQKHHNENSSSMMCAVQITLDMVAI
ITKEVTTCLTSMTFDPELGFVPSSCKELSVILPSFKLCCDWLFSNRDIWYPQPPIVDDRS
IDLWNNLAALCDWLCSDDKQFSVRTFMDNHHDLVEVSLAEDFEMSGFSPLVNSESETRFV
MNNEAGGSDVEDCVRLNLIRDFLEYLCGMEEPLLAFKQGRYVALVESKPVECIVNDDGYN
QDMIEADLQDVDASYEEEQPDSENEFSELKAYRDSLQRTRDVHEKRRNQIQASLDAAGSK
NKKMYVTPKSLIPDTNCFIDHLDMISDLMEHGQFIVCVCLVVLTELEGLAQESKGNTEHN
RRVHANAAASLRFIQEKFTSRHVALRALTNQGSALDTISFRSQDHYSDKGTNDDLILMCC
EKYEEKTKKNNSCSTVLLTDDRNLRVKSLTRNMPTKSIPEFCKWLFAV
Nucleotide sequence
Length: 4,017
>KH2012:KH.C2.530.v1.A.SL1-1
TTATATATAGTGAGTATAAACGTGTAGCAGGTTTTGTATGTTATTCATAAAATAATTATA
ATTCTTTGACCAAAAAAACACTGCCATGGCTTCTGATCGACTGCCTGTTGTATCGTTGAA
CGAAAGCTCTCTTCGGCGTTTGCAGCAAAAACTTCAAAAAATGAAAGAAAGTGAAAAATT
AGACGAAGCAATAACACCAAGCCCGACAACAGACAAAAAGCCAAGACAAAGGAAACCAAC
AAGATCGCCAAAATATGAAGTTTATAAACCCGGTGTAACTCGATTGTCGAATCGTAGAGA
AAATCCAAGCACAGAAAACGCTCAGAGCTTCCACAAAACCCAAAAAGATCTGAAATCAGC
TGGACGAGAAGTATCTGCATCTGGAGACAAAAAGAAAGTGAATGAGGATAGAAAACCAAC
CTCCGATCGCAGGAGAAGAAGAGAAGGAAAAAGGAGAGACGCGAACCACAGAAGCAGGAA
GAGTCCGGAGGAAAACAGTGATGAGTCATCTGACATGGAGGAAGGATACCTTGCTCGTCA
TCATCGTAGGATGGGAAACACTCGTCATCTGAGCTCAACTTCTAATGATGGAGCTGGTGA
GAAAACAGATGAGTTAGAATGGGATAATTACAATCATAGTCGGTTGTTTGAACCTTGGAG
TGAAATGGACCAACAGTGTGATGATCAGCAACAACATGAGCCACATACTGAAACGACAGG
AGAGATCTTTGTGGAAGAAAAACCAAAACCGCAAAATCGGAAACAGGATAAGAAAAGAAA
AAGTCGCAAATCTGTCGAGTTACGTGAAAAACCAACCAACAAAGTTCCTCATTCAGGTCG
TCCATGTTATATGGATGACCCGGTATCAATAAGCAATGAAGAGGAAGAGGATGGAACATC
CGCATCCAACACTGAGAATGAAACATCCAGGCAACAGTTGAATCAAAAGAAGAAACTATA
CAACCCCAGTAACCCTGATACTCCAATACTGGTCAAATCAAATCGAAGGGGTTGTGTTAA
AGTGGATAAAATGAATGAAAATATTCCAGTTTACAATCAGGAATATTTTTCAAGTCCCCG
TTTTCCCGCTCCAAACCCTCGTAACTTACCACTGGATGGCAGAAGACAAAGAACCCTCTA
TGATGCAACAACCAACACTAATCAAGTTTACGTACCACCTACTCGACCATCTAACTACTT
TATGCCATCACCTGTTCCACCGGAGGCATGGAAGAGCAATGATAAGTACGCTTATGAGAT
GGAACAAAGGAAACAACAACAACAACAGGTAACCATGGCGTGTAAAGCGCTGATTGCTGA
TCACATGACCAACATCCGTCGTCAGTCATGCGTGACCATGCTTGCTGAAGCAGAAAAGCA
TGAAACAGCGATAAGTTCATTGTTATCGAATAGTGACTTCACAATGAAGAATTTTACCGA
GATACTTCGAAAGTCAAGGAATAAGTTAAAGCAAATTTATGAGAGTCTTATTCTCACTGA
CATTGAAACAGCATCAAAACATAATGTGGAGCAAACACTCTGGAAGAATGTCTTTCATCA
GGTTATTGAAAAACTTCGAGAACAAATTGCTTCGTGTACTGAAGATGAGAAAACTGAACT
GAAAGATCTTTTAATACTTATCCTTGACCAGGCAGTTGCTTTCTATGAAAACTTGGTGTC
TGGACTGCAACAAACTTATCGCTTCAGTATAAAGGAGATGTTGCGTAATCCGACTGTGGC
TCGCTCTGTACACAAGCAAGCTGGGAAAAGGACAAAGTTTGCGATCATGAGCGTACAAAG
ATCATTGATATGTCTTGGTGACATCACAAGGTACAAGGAGAATGCTAATGATTCAAACAA
CTTTGGAAGGGCAAGGAATTGGTACATGCAAGCCAGAGCATTGGAACCTCGTAACGGCCG
TCCATACAACCAACTGGCAATCTTGGCAGTTCGTACGCGGCGAAAACTCGACGCTGTGTA
TTACTATGCACGTAGTTTAGCTACCATTGGCAACCCTATTCTCACTGCAAGGGAAAGTCT
AATTGCTCTGTTTGATGATGCAAGGAGAAAGCTTGAATATACTCGAAGAAAAGAAGGTTC
AAAGAATCAAAAAACAACAGTTTCTGATCAAGAAAATAAAGCAACTAAATCGAAAGGAAA
CAATCCCATGCAGATTTGGTGCAAACCTGGCTCCCACCATCCACAAGAGTCATCTGCATC
ATCTAAAACATCAGCAACATCCAAAGAGTCAGCAGATCTTACTCCTGATATTGAAAAACT
CTCTTTGTCTTCCTTGACTCCATCTGAGATCATGAAGCAGTTTAGCCTCATGTTCATTAA
CATTCACGGAAAACTTTTCACGAGAGTTGGTTTTGAATCTTTTCATGAATTAAAGCAAAA
AGTTCTTCATCTGTTTCAACAGGCGCTACAGTGTCGTCCACCGCTTATAAACAGTCAGAC
CTTACAACATGTGATGGCAATCAATTACTTTAGTGTGTTTGACCAACAGCAGAAACACCA
CAATGAAAATTCTAGCAGCATGATGTGTGCTGTGCAAATCACCCTTGACATGGTTGCTAT
AATAACCAAAGAGGTCACGACCTGTCTCACCTCCATGACCTTTGACCCTGAACTTGGGTT
TGTTCCGTCGTCATGTAAAGAACTTAGTGTGATTCTTCCTTCTTTCAAACTCTGCTGTGA
TTGGTTGTTTTCAAACCGAGATATCTGGTACCCTCAACCACCTATAGTGGATGACAGGTC
GATTGATTTATGGAACAATCTTGCTGCGTTATGTGATTGGTTATGCAGTGACGACAAACA
ATTTTCCGTTCGAACTTTTATGGACAACCATCATGACTTAGTGGAGGTGAGTCTCGCGGA
GGATTTTGAAATGTCGGGGTTTTCTCCGCTCGTAAACTCGGAGAGCGAAACAAGGTTCGT
GATGAACAATGAAGCGGGAGGGAGTGATGTTGAGGATTGTGTTCGGCTTAATCTCATCCG
AGACTTCCTGGAGTACCTCTGTGGGATGGAGGAGCCACTGCTTGCTTTTAAACAAGGAAG
ATATGTGGCATTGGTGGAATCAAAACCTGTTGAATGTATTGTAAATGATGATGGTTATAA
TCAAGACATGATTGAAGCTGATCTTCAGGACGTAGATGCAAGTTACGAGGAGGAGCAGCC
GGACTCTGAAAATGAGTTTTCCGAACTGAAGGCTTATCGAGATTCACTCCAGAGGACCCG
CGATGTTCATGAGAAGAGAAGGAACCAAATCCAGGCATCACTGGATGCAGCGGGATCAAA
GAACAAGAAGATGTACGTGACTCCAAAGAGCTTGATCCCAGATACGAATTGTTTCATTGA
TCATCTTGATATGATAAGTGATCTCATGGAACACGGGCAATTTATTGTGTGCGTATGTCT
TGTAGTGTTGACCGAATTAGAAGGACTGGCACAAGAAAGTAAAGGCAACACTGAACACAA
CCGACGTGTTCATGCGAATGCTGCCGCATCTCTTCGTTTCATACAAGAGAAATTTACATC
AAGACACGTTGCTTTGCGTGCTCTTACTAACCAAGGTTCTGCGCTCGATACGATCTCATT
CAGGAGCCAAGACCATTACAGTGACAAGGGCACGAATGATGATTTAATTCTCATGTGTTG
TGAAAAATATGAAGAAAAAACGAAAAAAAACAACTCGTGCTCCACAGTTTTGCTCACTGA
TGACCGTAATCTAAGAGTAAAATCGCTGACGCGTAACATGCCAACAAAATCTATTCCTGA
GTTCTGCAAATGGTTATTTGCAGTTTAACACCAGCAATAATTTTACTTGTTTCTTTCACA
ATGTTTTGCTGATATTATTTCTTTTCTATTCTGCAACTGTGTTTTTATTCGAGCATTATT
TTTTAAACGATACTGTCCAAAACATTTCTTTCTATCTGTATCTTTTTCCAACTGGAAAAA
GAAAAAAAGTTTTACTGTTTTCGATCTACGGCTACTGTCCTCCAATTTTTACAGCTT
| Gene3D |
TPR-like_helical_dom_sf (IPR011990) - T[428-669] 4.3E-54 |
| SUPERFAMILY |
TPR-like_helical_dom_sf (IPR011990) - T[458-672] 1.56E-71 - T[744-841] 1.56E-71 - T[872-1004] 1.56E-71 |
| Pfam |
EST1 (IPR019458) - T[489-595] 5.4E-19 |
| Pfam |
DNA/RNA-bd_Est1-type (IPR018834) - T[604-952] 7.4E-52 |
| SUPERFAMILY |
PIN-like_dom_sf (IPR029060) - T[1088-1153] 7.45E-9 - T[1186-1240] 7.45E-9 |
| SMART |
PIN_dom (IPR002716) - T[1089-1226] 1.9E-15 |
| Pfam |
PIN_dom (IPR002716) - T[1092-1237] 3.8E-20 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SMG7_HUMAN | 23.984 % | 101 | 1.99E-21 |
| EST1A_HUMAN | 37.286 % | 524 | 1.94E-163 |