- Molecular Tool 'ciad79a05-MO (Hamada's MO)' >
- Transcript 'Harore.CG.MTP2014.S7...' >
- Transcript 'Phmamm.CG.MTP2014.S6...' >
- Transcript 'KH2012:KH.C2.348.v6....'
Transcript Model
Transcript Id
KH2012:KH.C2.348.v6.A.SL6-1
Possible name(s)
NCOA7; OXR1; TLDC2
Gene model
Location
KhC2 [5,974,169 / 5,995,382]
Amino acid sequence
Length: 695
>KH.C2.348.v6.A.SL6-1
VGRVWCCKNMFSTCSSHNGNRKSSQPAGTIQYNVGNRDTLRSIAVNFNTTPSAIMKLNKL
TSSYIFPEQVLFVPETNILKPTVEQVSQNSGTNFDGDFSFLAPLSASPGQLDFSKPKKFQ
DLLVVSTQEDIKDANSNSKLLRDMGADTNKPEVTTETPVSPTITRGISQTSDTSVEGKQP
RTRMFSTESEPFEENFIKMTVRYITSTQETVEGVLLVTPTSIMFDPDANDPLAILHGCEK
FGIMCNLSLITSVSMFCDKGCSSTSKIPEPPKPKDENNTPPHDGQLVDISSDSTPTITPT
LPTNQEAQKSPTGQSETSDKEEKVTTRAEVKLKEEFPFLHSVVKSVEEFFPDEETNQSGL
GSPAQIIERMYLCVRSNTPMMKTFSIHSDLEKGNTSMTSSSRSNDESKEIWFQTHRERSD
QLLAFFMQWNPDPYTLDFAEQNGFVVMDPLTEFEINDKPKCDVTDNDARGRSSTNTSLEF
IEDFFAESRIEKEWEIVSVEEAQRRSTLGAIELADDDTSLMPDLLDSSNLLNDDTLLELC
RHIPARTIGCAWKLLYSTFEHGMSLRTLYRKVTNKYHEDTPVVIVVQDSNGHVFGAFCSN
EPHVSEHFYGTGETFLFTLEPNIEIFTWSGENNFFVKGNPDSLSIGGGDGASGLWLDSDL
CHGSSHTCLTFQNNPLASTEDFFIQNVEVWGFDAS
Nucleotide sequence
Length: 2,456
>KH2012:KH.C2.348.v6.A.SL6-1
CGTAGGTCGTGTTTGGTGCTGTAAAAACATGTTTTCGACCTGTAGCAGCCATAATGGAAA
CAGAAAATCATCTCAACCTGCAGGGACCATTCAATACAACGTTGGGAACAGAGACACTTT
AAGAAGCATTGCGGTTAACTTTAACACTACCCCTTCAGCGATTATGAAGTTAAACAAACT
AACGTCAAGTTACATTTTCCCTGAACAAGTTTTATTTGTCCCGGAGACGAATATTTTGAA
ACCAACAGTAGAACAAGTGTCCCAAAACTCGGGAACAAATTTTGACGGAGATTTTTCCTT
CCTGGCTCCTTTGTCTGCATCACCTGGTCAACTTGACTTCTCAAAACCAAAGAAGTTCCA
GGATTTGCTGGTAGTTTCCACACAAGAGGATATTAAAGATGCAAACAGTAATTCAAAACT
GCTAAGAGACATGGGAGCAGACACCAACAAACCAGAGGTTACAACAGAGACTCCAGTAAG
CCCCACTATAACAAGAGGTATCTCCCAAACATCGGACACAAGTGTGGAAGGTAAACAACC
TCGTACACGAATGTTTTCAACCGAGTCCGAACCATTTGAGGAAAACTTTATAAAGATGAC
TGTACGATATATTACCTCTACTCAGGAAACTGTTGAAGGTGTTCTTCTCGTCACACCGAC
CTCAATAATGTTCGATCCTGATGCAAACGATCCACTTGCTATTCTACATGGGTGCGAAAA
GTTTGGAATCATGTGTAACTTGTCTCTAATTACAAGTGTTTCCATGTTCTGTGATAAAGG
ATGCAGTAGTACAAGCAAAATCCCGGAACCTCCGAAACCAAAAGACGAAAACAACACCCC
ACCACACGATGGCCAACTTGTGGATATCTCGTCAGATTCAACGCCCACGATCACGCCCAC
TTTACCGACCAATCAGGAGGCTCAAAAATCCCCAACCGGCCAATCAGAGACCTCGGATAA
AGAAGAAAAGGTCACGACACGAGCAGAGGTTAAATTGAAAGAAGAATTCCCGTTTCTTCA
CTCGGTTGTCAAGTCTGTTGAAGAATTTTTCCCCGATGAAGAAACGAACCAATCAGGTCT
CGGATCCCCGGCACAGATCATAGAACGTATGTATTTATGTGTAAGATCAAACACGCCAAT
GATGAAAACATTTTCAATTCACTCCGATCTCGAAAAGGGGAATACCTCGATGACGTCATC
ATCAAGATCGAACGACGAATCGAAGGAGATTTGGTTTCAAACTCATCGCGAGAGATCCGA
CCAGCTACTAGCATTCTTCATGCAATGGAACCCGGATCCGTATACACTCGACTTCGCTGA
ACAGAACGGTTTCGTGGTGATGGATCCACTTACGGAGTTTGAAATCAACGATAAACCAAA
GTGTGACGTCACAGACAACGACGCACGTGGTCGCTCTTCAACAAATACGTCACTCGAATT
CATTGAAGATTTTTTCGCGGAATCCAGGATTGAGAAAGAGTGGGAGATTGTAAGTGTGGA
GGAAGCACAACGCCGGTCAACACTGGGAGCCATCGAACTCGCAGATGATGATACTTCGTT
GATGCCCGATCTACTTGACAGCAGCAACTTGTTGAATGACGATACCTTGCTAGAGTTATG
TCGTCACATACCAGCGCGTACCATTGGTTGTGCATGGAAACTTCTATACAGCACATTTGA
ACATGGGATGAGTCTACGTACATTGTACAGGAAAGTTACGAATAAATATCATGAAGACAC
GCCAGTGGTTATAGTGGTGCAAGACAGCAATGGCCATGTTTTTGGTGCTTTCTGTTCCAA
TGAGCCACACGTCAGCGAACATTTTTATGGCACGGGTGAAACTTTCTTGTTCACGCTTGA
ACCGAACATAGAAATCTTTACCTGGTCGGGTGAAAATAATTTCTTCGTCAAAGGAAATCC
TGATTCCTTGTCCATCGGGGGTGGAGATGGTGCTTCGGGGTTGTGGCTTGACAGTGACTT
GTGCCACGGCAGCAGCCATACATGCCTCACCTTTCAAAACAATCCACTTGCCTCAACAGA
AGACTTTTTTATTCAAAACGTTGAGGTTTGGGGGTTTGACGCCAGTTGATGTGACGTCAT
AATAACCTCTATTACCGCATATGCACACGATTTTTGCCGCTGGTGCAAGATGGAGATGTG
TTTTCAATTTACTGAAAAGCGAATGATCAAAAGTGGAAGAAAATCTGAAAAAGTGGAAGT
GTTTTTGTGGCAGCATTACTCGGTTTGTTTGCCTTTTGTTTCGGAACAAACCTATTCTGT
TGTGACGTGTGAAAACCACTGTTATGTCATAGGGCCAAGTTAATTGGTTCTAGTTTTCGT
ATCTATTTATAGCTGCTGCAAAGAACATCAGTAGCTATTATAGTAAGCGTGCAATCTCTA
TTGTTTTCATTTTCGTTAACTGCTATTGTGTAATAAATTACTGTTAAAAGTTGAAA
| Gene3D |
LysM_dom_sf (IPR036779) - T[15-81] 4.7E-12 |
| CDD |
LysM_dom (IPR018392) - T[30-73] 1.00452E-6 |
| ProSiteProfiles |
LysM_dom (IPR018392) - T[30-73] 10.646 |
| SMART |
LysM_dom (IPR018392) - T[31-74] 4.0E-7 |
| Pfam |
LysM_dom (IPR018392) - T[32-74] 3.1E-9 |
| SMART |
TLDc_dom (IPR006571) - T[528-693] 1.8E-62 |
| Pfam |
TLDc_dom (IPR006571) - T[554-692] 3.8E-38 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| OXR1_HUMAN | 40.51 % | 243 | 1.68E-69 |
| NCOA7_HUMAN | 40.741 % | 241 | 2.64E-68 |
| TLDC2_HUMAN | 44.706 % | 160 | 2.42E-45 |