- Transcript 'KH2012:KH.C2.348.v6....' >
- Transcript 'KH2012:KH.C2.36.v4.A...' >
- Transcript 'KH2012:KH.C2.348.v6....'
Transcript Model
Transcript Id
KH2012:KH.C2.348.v6.A.SL10-1
Possible name(s)
NCOA7; OXR1; TLDC2
Gene model
Location
KhC2 [5,974,169 / 5,995,377]
Amino acid sequence
Length: 693
>KH.C2.348.v6.A.SL10-1
RVWCCKNMFSTCSSHNGNRKSSQPAGTIQYNVGNRDTLRSIAVNFNTTPSAIMKLNKLTS
SYIFPEQVLFVPETNILKPTVEQVSQNSGTNFDGDFSFLAPLSASPGQLDFSKPKKFQDL
LVVSTQEDIKDANSNSKLLRDMGADTNKPEVTTETPVSPTITRGISQTSDTSVEGKQPRT
RMFSTESEPFEENFIKMTVRYITSTQETVEGVLLVTPTSIMFDPDANDPLAILHGCEKFG
IMCNLSLITSVSMFCDKGCSSTSKIPEPPKPKDENNTPPHDGQLVDISSDSTPTITPTLP
TNQEAQKSPTGQSETSDKEEKVTTRAEVKLKEEFPFLHSVVKSVEEFFPDEETNQSGLGS
PAQIIERMYLCVRSNTPMMKTFSIHSDLEKGNTSMTSSSRSNDESKEIWFQTHRERSDQL
LAFFMQWNPDPYTLDFAEQNGFVVMDPLTEFEINDKPKCDVTDNDARGRSSTNTSLEFIE
DFFAESRIEKEWEIVSVEEAQRRSTLGAIELADDDTSLMPDLLDSSNLLNDDTLLELCRH
IPARTIGCAWKLLYSTFEHGMSLRTLYRKVTNKYHEDTPVVIVVQDSNGHVFGAFCSNEP
HVSEHFYGTGETFLFTLEPNIEIFTWSGENNFFVKGNPDSLSIGGGDGASGLWLDSDLCH
GSSHTCLTFQNNPLASTEDFFIQNVEVWGFDAS
Nucleotide sequence
Length: 2,451
>KH2012:KH.C2.348.v6.A.SL10-1
GTCGTGTTTGGTGCTGTAAAAACATGTTTTCGACCTGTAGCAGCCATAATGGAAACAGAA
AATCATCTCAACCTGCAGGGACCATTCAATACAACGTTGGGAACAGAGACACTTTAAGAA
GCATTGCGGTTAACTTTAACACTACCCCTTCAGCGATTATGAAGTTAAACAAACTAACGT
CAAGTTACATTTTCCCTGAACAAGTTTTATTTGTCCCGGAGACGAATATTTTGAAACCAA
CAGTAGAACAAGTGTCCCAAAACTCGGGAACAAATTTTGACGGAGATTTTTCCTTCCTGG
CTCCTTTGTCTGCATCACCTGGTCAACTTGACTTCTCAAAACCAAAGAAGTTCCAGGATT
TGCTGGTAGTTTCCACACAAGAGGATATTAAAGATGCAAACAGTAATTCAAAACTGCTAA
GAGACATGGGAGCAGACACCAACAAACCAGAGGTTACAACAGAGACTCCAGTAAGCCCCA
CTATAACAAGAGGTATCTCCCAAACATCGGACACAAGTGTGGAAGGTAAACAACCTCGTA
CACGAATGTTTTCAACCGAGTCCGAACCATTTGAGGAAAACTTTATAAAGATGACTGTAC
GATATATTACCTCTACTCAGGAAACTGTTGAAGGTGTTCTTCTCGTCACACCGACCTCAA
TAATGTTCGATCCTGATGCAAACGATCCACTTGCTATTCTACATGGGTGCGAAAAGTTTG
GAATCATGTGTAACTTGTCTCTAATTACAAGTGTTTCCATGTTCTGTGATAAAGGATGCA
GTAGTACAAGCAAAATCCCGGAACCTCCGAAACCAAAAGACGAAAACAACACCCCACCAC
ACGATGGCCAACTTGTGGATATCTCGTCAGATTCAACGCCCACGATCACGCCCACTTTAC
CGACCAATCAGGAGGCTCAAAAATCCCCAACCGGCCAATCAGAGACCTCGGATAAAGAAG
AAAAGGTCACGACACGAGCAGAGGTTAAATTGAAAGAAGAATTCCCGTTTCTTCACTCGG
TTGTCAAGTCTGTTGAAGAATTTTTCCCCGATGAAGAAACGAACCAATCAGGTCTCGGAT
CCCCGGCACAGATCATAGAACGTATGTATTTATGTGTAAGATCAAACACGCCAATGATGA
AAACATTTTCAATTCACTCCGATCTCGAAAAGGGGAATACCTCGATGACGTCATCATCAA
GATCGAACGACGAATCGAAGGAGATTTGGTTTCAAACTCATCGCGAGAGATCCGACCAGC
TACTAGCATTCTTCATGCAATGGAACCCGGATCCGTATACACTCGACTTCGCTGAACAGA
ACGGTTTCGTGGTGATGGATCCACTTACGGAGTTTGAAATCAACGATAAACCAAAGTGTG
ACGTCACAGACAACGACGCACGTGGTCGCTCTTCAACAAATACGTCACTCGAATTCATTG
AAGATTTTTTCGCGGAATCCAGGATTGAGAAAGAGTGGGAGATTGTAAGTGTGGAGGAAG
CACAACGCCGGTCAACACTGGGAGCCATCGAACTCGCAGATGATGATACTTCGTTGATGC
CCGATCTACTTGACAGCAGCAACTTGTTGAATGACGATACCTTGCTAGAGTTATGTCGTC
ACATACCAGCGCGTACCATTGGTTGTGCATGGAAACTTCTATACAGCACATTTGAACATG
GGATGAGTCTACGTACATTGTACAGGAAAGTTACGAATAAATATCATGAAGACACGCCAG
TGGTTATAGTGGTGCAAGACAGCAATGGCCATGTTTTTGGTGCTTTCTGTTCCAATGAGC
CACACGTCAGCGAACATTTTTATGGCACGGGTGAAACTTTCTTGTTCACGCTTGAACCGA
ACATAGAAATCTTTACCTGGTCGGGTGAAAATAATTTCTTCGTCAAAGGAAATCCTGATT
CCTTGTCCATCGGGGGTGGAGATGGTGCTTCGGGGTTGTGGCTTGACAGTGACTTGTGCC
ACGGCAGCAGCCATACATGCCTCACCTTTCAAAACAATCCACTTGCCTCAACAGAAGACT
TTTTTATTCAAAACGTTGAGGTTTGGGGGTTTGACGCCAGTTGATGTGACGTCATAATAA
CCTCTATTACCGCATATGCACACGATTTTTGCCGCTGGTGCAAGATGGAGATGTGTTTTC
AATTTACTGAAAAGCGAATGATCAAAAGTGGAAGAAAATCTGAAAAAGTGGAAGTGTTTT
TGTGGCAGCATTACTCGGTTTGTTTGCCTTTTGTTTCGGAACAAACCTATTCTGTTGTGA
CGTGTGAAAACCACTGTTATGTCATAGGGCCAAGTTAATTGGTTCTAGTTTTCGTATCTA
TTTATAGCTGCTGCAAAGAACATCAGTAGCTATTATAGTAAGCGTGCAATCTCTATTGTT
TTCATTTTCGTTAACTGCTATTGTGTAATAAATTACTGTTAAAAGTTGAAA
| Gene3D |
LysM_dom_sf (IPR036779) - T[13-79] 4.7E-12 |
| CDD |
LysM_dom (IPR018392) - T[28-71] 1.00162E-6 |
| ProSiteProfiles |
LysM_dom (IPR018392) - T[28-71] 10.646 |
| SMART |
LysM_dom (IPR018392) - T[29-72] 4.0E-7 |
| Pfam |
LysM_dom (IPR018392) - T[30-72] 3.1E-9 |
| SMART |
TLDc_dom (IPR006571) - T[526-691] 1.8E-62 |
| Pfam |
TLDc_dom (IPR006571) - T[552-690] 3.8E-38 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| OXR1_HUMAN | 40.51 % | 243 | 1.54E-69 |
| NCOA7_HUMAN | 41.538 % | 241 | 2.49E-68 |
| TLDC2_HUMAN | 44.706 % | 160 | 2.09E-45 |