- Transcript 'KH2012:KH.C2.348.v6....'
Transcript Model
Transcript Id
KH2012:KH.C2.348.v6.A.nonSL8-1
Possible name(s)
NCOA7; OXR1; TLDC2
Gene model
Location
KhC2 [5,974,169 / 5,995,471]
Amino acid sequence
Length: 697
>KH.C2.348.v6.A.nonSL8-1
LSVGRVWCCKNMFSTCSSHNGNRKSSQPAGTIQYNVGNRDTLRSIAVNFNTTPSAIMKLN
KLTSSYIFPEQVLFVPETNILKPTVEQVSQNSGTNFDGDFSFLAPLSASPGQLDFSKPKK
FQDLLVVSTQEDIKDANSNSKLLRDMGADTNKPEVTTETPVSPTITRGISQTSDTSVEGK
QPRTRMFSTESEPFEENFIKMTVRYITSTQETVEGVLLVTPTSIMFDPDANDPLAILHGC
EKFGIMCNLSLITSVSMFCDKGCSSTSKIPEPPKPKDENNTPPHDGQLVDISSDSTPTIT
PTLPTNQEAQKSPTGQSETSDKEEKVTTRAEVKLKEEFPFLHSVVKSVEEFFPDEETNQS
GLGSPAQIIERMYLCVRSNTPMMKTFSIHSDLEKGNTSMTSSSRSNDESKEIWFQTHRER
SDQLLAFFMQWNPDPYTLDFAEQNGFVVMDPLTEFEINDKPKCDVTDNDARGRSSTNTSL
EFIEDFFAESRIEKEWEIVSVEEAQRRSTLGAIELADDDTSLMPDLLDSSNLLNDDTLLE
LCRHIPARTIGCAWKLLYSTFEHGMSLRTLYRKVTNKYHEDTPVVIVVQDSNGHVFGAFC
SNEPHVSEHFYGTGETFLFTLEPNIEIFTWSGENNFFVKGNPDSLSIGGGDGASGLWLDS
DLCHGSSHTCLTFQNNPLASTEDFFIQNVEVWGFDAS
Nucleotide sequence
Length: 2,545
>KH2012:KH.C2.348.v6.A.nonSL8-1
GATTATTGTGCTAAGGTCTTGTACGTATTTAAACTTTATACTGATTTTAAGGCGTGAAAA
ATAATACATATAAGAAAGTCATAATTAAGCGTAGGTCGTGTTTGGTGCTGTAAAAACATG
TTTTCGACCTGTAGCAGCCATAATGGAAACAGAAAATCATCTCAACCTGCAGGGACCATT
CAATACAACGTTGGGAACAGAGACACTTTAAGAAGCATTGCGGTTAACTTTAACACTACC
CCTTCAGCGATTATGAAGTTAAACAAACTAACGTCAAGTTACATTTTCCCTGAACAAGTT
TTATTTGTCCCGGAGACGAATATTTTGAAACCAACAGTAGAACAAGTGTCCCAAAACTCG
GGAACAAATTTTGACGGAGATTTTTCCTTCCTGGCTCCTTTGTCTGCATCACCTGGTCAA
CTTGACTTCTCAAAACCAAAGAAGTTCCAGGATTTGCTGGTAGTTTCCACACAAGAGGAT
ATTAAAGATGCAAACAGTAATTCAAAACTGCTAAGAGACATGGGAGCAGACACCAACAAA
CCAGAGGTTACAACAGAGACTCCAGTAAGCCCCACTATAACAAGAGGTATCTCCCAAACA
TCGGACACAAGTGTGGAAGGTAAACAACCTCGTACACGAATGTTTTCAACCGAGTCCGAA
CCATTTGAGGAAAACTTTATAAAGATGACTGTACGATATATTACCTCTACTCAGGAAACT
GTTGAAGGTGTTCTTCTCGTCACACCGACCTCAATAATGTTCGATCCTGATGCAAACGAT
CCACTTGCTATTCTACATGGGTGCGAAAAGTTTGGAATCATGTGTAACTTGTCTCTAATT
ACAAGTGTTTCCATGTTCTGTGATAAAGGATGCAGTAGTACAAGCAAAATCCCGGAACCT
CCGAAACCAAAAGACGAAAACAACACCCCACCACACGATGGCCAACTTGTGGATATCTCG
TCAGATTCAACGCCCACGATCACGCCCACTTTACCGACCAATCAGGAGGCTCAAAAATCC
CCAACCGGCCAATCAGAGACCTCGGATAAAGAAGAAAAGGTCACGACACGAGCAGAGGTT
AAATTGAAAGAAGAATTCCCGTTTCTTCACTCGGTTGTCAAGTCTGTTGAAGAATTTTTC
CCCGATGAAGAAACGAACCAATCAGGTCTCGGATCCCCGGCACAGATCATAGAACGTATG
TATTTATGTGTAAGATCAAACACGCCAATGATGAAAACATTTTCAATTCACTCCGATCTC
GAAAAGGGGAATACCTCGATGACGTCATCATCAAGATCGAACGACGAATCGAAGGAGATT
TGGTTTCAAACTCATCGCGAGAGATCCGACCAGCTACTAGCATTCTTCATGCAATGGAAC
CCGGATCCGTATACACTCGACTTCGCTGAACAGAACGGTTTCGTGGTGATGGATCCACTT
ACGGAGTTTGAAATCAACGATAAACCAAAGTGTGACGTCACAGACAACGACGCACGTGGT
CGCTCTTCAACAAATACGTCACTCGAATTCATTGAAGATTTTTTCGCGGAATCCAGGATT
GAGAAAGAGTGGGAGATTGTAAGTGTGGAGGAAGCACAACGCCGGTCAACACTGGGAGCC
ATCGAACTCGCAGATGATGATACTTCGTTGATGCCCGATCTACTTGACAGCAGCAACTTG
TTGAATGACGATACCTTGCTAGAGTTATGTCGTCACATACCAGCGCGTACCATTGGTTGT
GCATGGAAACTTCTATACAGCACATTTGAACATGGGATGAGTCTACGTACATTGTACAGG
AAAGTTACGAATAAATATCATGAAGACACGCCAGTGGTTATAGTGGTGCAAGACAGCAAT
GGCCATGTTTTTGGTGCTTTCTGTTCCAATGAGCCACACGTCAGCGAACATTTTTATGGC
ACGGGTGAAACTTTCTTGTTCACGCTTGAACCGAACATAGAAATCTTTACCTGGTCGGGT
GAAAATAATTTCTTCGTCAAAGGAAATCCTGATTCCTTGTCCATCGGGGGTGGAGATGGT
GCTTCGGGGTTGTGGCTTGACAGTGACTTGTGCCACGGCAGCAGCCATACATGCCTCACC
TTTCAAAACAATCCACTTGCCTCAACAGAAGACTTTTTTATTCAAAACGTTGAGGTTTGG
GGGTTTGACGCCAGTTGATGTGACGTCATAATAACCTCTATTACCGCATATGCACACGAT
TTTTGCCGCTGGTGCAAGATGGAGATGTGTTTTCAATTTACTGAAAAGCGAATGATCAAA
AGTGGAAGAAAATCTGAAAAAGTGGAAGTGTTTTTGTGGCAGCATTACTCGGTTTGTTTG
CCTTTTGTTTCGGAACAAACCTATTCTGTTGTGACGTGTGAAAACCACTGTTATGTCATA
GGGCCAAGTTAATTGGTTCTAGTTTTCGTATCTATTTATAGCTGCTGCAAAGAACATCAG
TAGCTATTATAGTAAGCGTGCAATCTCTATTGTTTTCATTTTCGTTAACTGCTATTGTGT
AATAAATTACTGTTAAAAGTTGAAA
| Gene3D |
LysM_dom_sf (IPR036779) - T[17-83] 4.8E-12 |
| ProSiteProfiles |
LysM_dom (IPR018392) - T[32-75] 10.646 |
| CDD |
LysM_dom (IPR018392) - T[32-75] 1.00742E-6 |
| SMART |
LysM_dom (IPR018392) - T[33-76] 4.0E-7 |
| Pfam |
LysM_dom (IPR018392) - T[34-76] 3.1E-9 |
| SMART |
TLDc_dom (IPR006571) - T[530-695] 1.8E-62 |
| Pfam |
TLDc_dom (IPR006571) - T[556-694] 3.9E-38 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| OXR1_HUMAN | 40.51 % | 243 | 1.51E-69 |
| NCOA7_HUMAN | 40.741 % | 241 | 2.69E-68 |
| TLDC2_HUMAN | 44.706 % | 160 | 2.27E-45 |