- Transcript 'Haaura.CG.MTP2014.S2...' >
- Transcript 'Haaura.CG.MTP2014.S1...' >
- Clone 'AHC0AAA193YE12' >
- Transcript 'KH2012:KH.C2.348.v6....'
Transcript Model
Transcript Id
KH2012:KH.C2.348.v6.A.nonSL11-1
Possible name(s)
NCOA7; OXR1; TLDC2
Gene model
Location
KhC2 [5,974,169 / 5,995,447]
Amino acid sequence
Length: 697
>KH.C2.348.v6.A.nonSL11-1
LSVGRVWCCKNMFSTCSSHNGNRKSSQPAGTIQYNVGNRDTLRSIAVNFNTTPSAIMKLN
KLTSSYIFPEQVLFVPETNILKPTVEQVSQNSGTNFDGDFSFLAPLSASPGQLDFSKPKK
FQDLLVVSTQEDIKDANSNSKLLRDMGADTNKPEVTTETPVSPTITRGISQTSDTSVEGK
QPRTRMFSTESEPFEENFIKMTVRYITSTQETVEGVLLVTPTSIMFDPDANDPLAILHGC
EKFGIMCNLSLITSVSMFCDKGCSSTSKIPEPPKPKDENNTPPHDGQLVDISSDSTPTIT
PTLPTNQEAQKSPTGQSETSDKEEKVTTRAEVKLKEEFPFLHSVVKSVEEFFPDEETNQS
GLGSPAQIIERMYLCVRSNTPMMKTFSIHSDLEKGNTSMTSSSRSNDESKEIWFQTHRER
SDQLLAFFMQWNPDPYTLDFAEQNGFVVMDPLTEFEINDKPKCDVTDNDARGRSSTNTSL
EFIEDFFAESRIEKEWEIVSVEEAQRRSTLGAIELADDDTSLMPDLLDSSNLLNDDTLLE
LCRHIPARTIGCAWKLLYSTFEHGMSLRTLYRKVTNKYHEDTPVVIVVQDSNGHVFGAFC
SNEPHVSEHFYGTGETFLFTLEPNIEIFTWSGENNFFVKGNPDSLSIGGGDGASGLWLDS
DLCHGSSHTCLTFQNNPLASTEDFFIQNVEVWGFDAS
Nucleotide sequence
Length: 2,521
>KH2012:KH.C2.348.v6.A.nonSL11-1
GTATTTAAACTTTATACTGATTTTAAGGCGTGAAAAATAATACATATAAGAAAGTCATAA
TTAAGCGTAGGTCGTGTTTGGTGCTGTAAAAACATGTTTTCGACCTGTAGCAGCCATAAT
GGAAACAGAAAATCATCTCAACCTGCAGGGACCATTCAATACAACGTTGGGAACAGAGAC
ACTTTAAGAAGCATTGCGGTTAACTTTAACACTACCCCTTCAGCGATTATGAAGTTAAAC
AAACTAACGTCAAGTTACATTTTCCCTGAACAAGTTTTATTTGTCCCGGAGACGAATATT
TTGAAACCAACAGTAGAACAAGTGTCCCAAAACTCGGGAACAAATTTTGACGGAGATTTT
TCCTTCCTGGCTCCTTTGTCTGCATCACCTGGTCAACTTGACTTCTCAAAACCAAAGAAG
TTCCAGGATTTGCTGGTAGTTTCCACACAAGAGGATATTAAAGATGCAAACAGTAATTCA
AAACTGCTAAGAGACATGGGAGCAGACACCAACAAACCAGAGGTTACAACAGAGACTCCA
GTAAGCCCCACTATAACAAGAGGTATCTCCCAAACATCGGACACAAGTGTGGAAGGTAAA
CAACCTCGTACACGAATGTTTTCAACCGAGTCCGAACCATTTGAGGAAAACTTTATAAAG
ATGACTGTACGATATATTACCTCTACTCAGGAAACTGTTGAAGGTGTTCTTCTCGTCACA
CCGACCTCAATAATGTTCGATCCTGATGCAAACGATCCACTTGCTATTCTACATGGGTGC
GAAAAGTTTGGAATCATGTGTAACTTGTCTCTAATTACAAGTGTTTCCATGTTCTGTGAT
AAAGGATGCAGTAGTACAAGCAAAATCCCGGAACCTCCGAAACCAAAAGACGAAAACAAC
ACCCCACCACACGATGGCCAACTTGTGGATATCTCGTCAGATTCAACGCCCACGATCACG
CCCACTTTACCGACCAATCAGGAGGCTCAAAAATCCCCAACCGGCCAATCAGAGACCTCG
GATAAAGAAGAAAAGGTCACGACACGAGCAGAGGTTAAATTGAAAGAAGAATTCCCGTTT
CTTCACTCGGTTGTCAAGTCTGTTGAAGAATTTTTCCCCGATGAAGAAACGAACCAATCA
GGTCTCGGATCCCCGGCACAGATCATAGAACGTATGTATTTATGTGTAAGATCAAACACG
CCAATGATGAAAACATTTTCAATTCACTCCGATCTCGAAAAGGGGAATACCTCGATGACG
TCATCATCAAGATCGAACGACGAATCGAAGGAGATTTGGTTTCAAACTCATCGCGAGAGA
TCCGACCAGCTACTAGCATTCTTCATGCAATGGAACCCGGATCCGTATACACTCGACTTC
GCTGAACAGAACGGTTTCGTGGTGATGGATCCACTTACGGAGTTTGAAATCAACGATAAA
CCAAAGTGTGACGTCACAGACAACGACGCACGTGGTCGCTCTTCAACAAATACGTCACTC
GAATTCATTGAAGATTTTTTCGCGGAATCCAGGATTGAGAAAGAGTGGGAGATTGTAAGT
GTGGAGGAAGCACAACGCCGGTCAACACTGGGAGCCATCGAACTCGCAGATGATGATACT
TCGTTGATGCCCGATCTACTTGACAGCAGCAACTTGTTGAATGACGATACCTTGCTAGAG
TTATGTCGTCACATACCAGCGCGTACCATTGGTTGTGCATGGAAACTTCTATACAGCACA
TTTGAACATGGGATGAGTCTACGTACATTGTACAGGAAAGTTACGAATAAATATCATGAA
GACACGCCAGTGGTTATAGTGGTGCAAGACAGCAATGGCCATGTTTTTGGTGCTTTCTGT
TCCAATGAGCCACACGTCAGCGAACATTTTTATGGCACGGGTGAAACTTTCTTGTTCACG
CTTGAACCGAACATAGAAATCTTTACCTGGTCGGGTGAAAATAATTTCTTCGTCAAAGGA
AATCCTGATTCCTTGTCCATCGGGGGTGGAGATGGTGCTTCGGGGTTGTGGCTTGACAGT
GACTTGTGCCACGGCAGCAGCCATACATGCCTCACCTTTCAAAACAATCCACTTGCCTCA
ACAGAAGACTTTTTTATTCAAAACGTTGAGGTTTGGGGGTTTGACGCCAGTTGATGTGAC
GTCATAATAACCTCTATTACCGCATATGCACACGATTTTTGCCGCTGGTGCAAGATGGAG
ATGTGTTTTCAATTTACTGAAAAGCGAATGATCAAAAGTGGAAGAAAATCTGAAAAAGTG
GAAGTGTTTTTGTGGCAGCATTACTCGGTTTGTTTGCCTTTTGTTTCGGAACAAACCTAT
TCTGTTGTGACGTGTGAAAACCACTGTTATGTCATAGGGCCAAGTTAATTGGTTCTAGTT
TTCGTATCTATTTATAGCTGCTGCAAAGAACATCAGTAGCTATTATAGTAAGCGTGCAAT
CTCTATTGTTTTCATTTTCGTTAACTGCTATTGTGTAATAAATTACTGTTAAAAGTTGAA
A
| Gene3D |
LysM_dom_sf (IPR036779) - T[17-83] 4.8E-12 |
| ProSiteProfiles |
LysM_dom (IPR018392) - T[32-75] 10.646 |
| CDD |
LysM_dom (IPR018392) - T[32-75] 1.00742E-6 |
| SMART |
LysM_dom (IPR018392) - T[33-76] 4.0E-7 |
| Pfam |
LysM_dom (IPR018392) - T[34-76] 3.1E-9 |
| SMART |
TLDc_dom (IPR006571) - T[530-695] 1.8E-62 |
| Pfam |
TLDc_dom (IPR006571) - T[556-694] 3.9E-38 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| OXR1_HUMAN | 40.51 % | 243 | 1.51E-69 |
| NCOA7_HUMAN | 40.741 % | 241 | 2.69E-68 |
| TLDC2_HUMAN | 44.706 % | 160 | 2.27E-45 |